Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00639 ATAGGGGTCGCCATGGAAGCACTGGCGGAGTTAGAACGATTGCAGACGAAAATCCTCGAACGAATATCAAATCTAGAGCTTGCTCTTCTTCCTCGCCGTTTCTCTGAGCCTCCCTCTGGAGGCGCGATTGCTGATACCGAAGCTCGACTCTCCGTCATTCTCCGTTCTAACGGAGTACACGAATTCTTTTTCATGAAGGTCCCCTCCGATTACTACGATTGGCCTCTCGAATGCCGGCGAGATGTCCTTGGTGCTGCCTCGGTTCATCATCTCTGCAAGAGCATGGTTTTGGTGAATACTCAAGCGCAGTCCAGTGTGGTTGATTGCAGTGATCGCAAAAATTCAAAGTACTATATTGTTGTTGTTCAGTATACAGCAAGATTCAATGCTGAAACCGTTAAAAACTTCCTCTATTCACTGAATAATGGCCAGATAGCCAAAAAGAAATTCAACTTGAGACTTGCTCCTGAAGAAACATCAGCAAAGTTGACTGGATACGAACACAATGCAGTGACTTGCATTGGCGGGAAGACAGACATTCCTGTGATATTGGATGAAGCAATAGTGAAACTCAATCCCGATTTCTTCTGGTTGGGTGGCGGGGAAACTGACCTGAAGCTGGGCATACGGACCTCTCAATTCATCAACTTTGTTAAACCTTTCATTTTCAGCTGTAGTGCCGCATGA 687 46.0 IGVAMEALAELERLQTKILERISNLELALLPRRFSEPPSGGAIADTEARLSVILRSNGVHEFFFMKVPSDYYDWPLECRRDVLGAASVHHLCKSMVLVNTQAQSSVVDCSDRKNSKYYIVVVQYTARFNAETVKNFLYSLNNGQIAKKKFNLRLAPEETSAKLTGYEHNAVTCIGGKTDIPVILDEAIVKLNPDFFWLGGGETDLKLGIRTSQFINFVKPFIFSCSAA 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27628236 27631182 + Bma007817.1 Bma12g00639 92065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00639 228 PANTHER UNCHARACTERIZED 5 227 - -
Bma12g00639 228 Pfam Aminoacyl-tRNA editing domain 89 217 IPR007214 GO:0002161
Bma12g00639 228 PANTHER YBAK/AMINOACYL-TRNA SYNTHETASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 5 227 - -
Bma12g00639 228 Gene3D - 77 226 IPR036754 GO:0002161
Bma12g00639 228 Coils Coil 8 28 - -
Bma12g00639 228 SUPERFAMILY YbaK/ProRS associated domain 86 224 IPR036754 GO:0002161
Bma12g00639 228 CDD YbaK_like 87 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00639 - - - dzi:111289308 355.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00158 Bma-Chr12:2213963 Bma12g00639 Bma-Chr12:27628236 2.64E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g523 . Blo03g00166 Bda06g00032 . . Bpe07g00171 . . Cmo06g00797 . . . . . . . . Bhi11g00202 . . . Hepe06g1138 Mch10g1557 . Cla10g00263 Cam10g0270 Cec10g0277 Cco10g0274 Clacu10g0270 Cmu10g1113 Cre10g0521 . . Cone6ag0677 Cone9ag0682 Lsi07g01308 . . Cme06g02577 . . . . . . . Bma12g00639 . . . Cma06g00777 . Car06g00691 . Cpe08g00745 . . . . . . . . . . . . . . . . Csa03g00282 Chy06g02040 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010483 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00639 Bma_Chr12 FPKM 51.681187 54.072624 103.380997 102.714561 408.025146 478.399506 403.99649 19.668085 18.278599 16.675077