Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00657 GAAGACCGATCATTTGTCCGAGGTATAGACGTGAACCGGCCGCCGTCGACGGCTGACTGCGAGGAGGAACCAGGCGTATCAAGTCCCAACAGCACGGTTTCGAGCGTTAGCGGAAAGCGAAGTGAGAGAGGAGTAAACGGAGAAGAGCTCGATCGCGGAGAAGAGCTCGACCTCGATCGAGCTTGCTCTCGAGGGAATAGTGATGAAGAAGACGGCGAAACCTCAAGAAAGAAGCTCAGACTCTCCAAAGACCAGTCGGCCATTTTAGAGGAGAGCTTCAAAGAGCACAATACTCTTAATCCAAAGCAGAAGCTGGCGTTGGCTAAGCAGTTGGGCCTCCGGGCGAGACAAGTGGAAGTCTGGTTTCAGAATAGAAGGGCAAGAACGAAGCTGAAGCAAACGGAGGTTGATTGCGAGTTTTTGAAAAGATGCTGCGAGAATCTGACGGAGGAGAATAGGCGGTTGCAGAAAGAAGTACAGGAGCTGAGAGCACTGAAACTTTCCCCACAGCTCTACATGCAAATGACCCCACCCACCACCCTCACCATGTGTCCCTCGTGCGAACGGGTCGGGGCCCAACCCCCCTCCGCCCGGGCCCACCCCCAGCTGGCCGCGGCCCAATCTCGACCCATCCACGTCAGCCCGTGGACAGTTTCCGGCCCGATAACCCACCAGAGGATCCACCCGAAATCATAA 696 55.6 EDRSFVRGIDVNRPPSTADCEEEPGVSSPNSTVSSVSGKRSERGVNGEELDRGEELDLDRACSRGNSDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVGAQPPSARAHPQLAAAQSRPIHVSPWTVSGPITHQRIHPKS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27787469 27788344 + Bma007838.1 Bma12g00657 92083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00657 231 MobiDBLite consensus disorder prediction 23 41 - -
Bma12g00657 231 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Bma12g00657 231 Pfam HD-ZIP protein N terminus 2 43 IPR006712 GO:0005634
Bma12g00657 231 SMART halz 132 175 IPR003106 GO:0006355|GO:0043565
Bma12g00657 231 SUPERFAMILY Homeodomain-like 66 133 IPR009057 -
Bma12g00657 231 Coils Coil 131 168 - -
Bma12g00657 231 CDD homeodomain 76 133 IPR001356 GO:0003677
Bma12g00657 231 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Bma12g00657 231 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Bma12g00657 231 Gene3D - 80 130 - -
Bma12g00657 231 MobiDBLite consensus disorder prediction 42 81 - -
Bma12g00657 231 PANTHER - 3 221 - -
Bma12g00657 231 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Bma12g00657 231 MobiDBLite consensus disorder prediction 1 81 - -
Bma12g00657 231 SMART HOX_1 74 136 IPR001356 GO:0003677
Bma12g00657 231 Pfam Homeobox associated leucine zipper 132 166 IPR003106 GO:0006355|GO:0043565
Bma12g00657 231 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 221 - -
Bma12g00657 231 Pfam Homeodomain 76 130 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00168 Bma-Chr10:1446294 Bma12g00657 Bma-Chr12:27787469 1.73E-71 dispersed
Bma12g00657 Bma-Chr12:27787469 Bma15g00444 Bma-Chr15:4823091 3.90E-71 dispersed
Bma12g00657 Bma-Chr12:27787469 Bma05g00746 Bma-Chr5:43873071 3.51E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58122 PF00046 Homeodomain 1.70E-16 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00657 K09338 - zju:107430326 348.591