Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00657 | GAAGACCGATCATTTGTCCGAGGTATAGACGTGAACCGGCCGCCGTCGACGGCTGACTGCGAGGAGGAACCAGGCGTATCAAGTCCCAACAGCACGGTTTCGAGCGTTAGCGGAAAGCGAAGTGAGAGAGGAGTAAACGGAGAAGAGCTCGATCGCGGAGAAGAGCTCGACCTCGATCGAGCTTGCTCTCGAGGGAATAGTGATGAAGAAGACGGCGAAACCTCAAGAAAGAAGCTCAGACTCTCCAAAGACCAGTCGGCCATTTTAGAGGAGAGCTTCAAAGAGCACAATACTCTTAATCCAAAGCAGAAGCTGGCGTTGGCTAAGCAGTTGGGCCTCCGGGCGAGACAAGTGGAAGTCTGGTTTCAGAATAGAAGGGCAAGAACGAAGCTGAAGCAAACGGAGGTTGATTGCGAGTTTTTGAAAAGATGCTGCGAGAATCTGACGGAGGAGAATAGGCGGTTGCAGAAAGAAGTACAGGAGCTGAGAGCACTGAAACTTTCCCCACAGCTCTACATGCAAATGACCCCACCCACCACCCTCACCATGTGTCCCTCGTGCGAACGGGTCGGGGCCCAACCCCCCTCCGCCCGGGCCCACCCCCAGCTGGCCGCGGCCCAATCTCGACCCATCCACGTCAGCCCGTGGACAGTTTCCGGCCCGATAACCCACCAGAGGATCCACCCGAAATCATAA | 696 | 55.6 | EDRSFVRGIDVNRPPSTADCEEEPGVSSPNSTVSSVSGKRSERGVNGEELDRGEELDLDRACSRGNSDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVGAQPPSARAHPQLAAAQSRPIHVSPWTVSGPITHQRIHPKS | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 27787469 | 27788344 | + | Bma007838.1 | Bma12g00657 | 92083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00657 | 231 | MobiDBLite | consensus disorder prediction | 23 | 41 | - | - | |
Bma12g00657 | 231 | ProSiteProfiles | 'Homeobox' domain profile. | 72 | 132 | IPR001356 | GO:0003677 | |
Bma12g00657 | 231 | Pfam | HD-ZIP protein N terminus | 2 | 43 | IPR006712 | GO:0005634 | |
Bma12g00657 | 231 | SMART | halz | 132 | 175 | IPR003106 | GO:0006355|GO:0043565 | |
Bma12g00657 | 231 | SUPERFAMILY | Homeodomain-like | 66 | 133 | IPR009057 | - | |
Bma12g00657 | 231 | Coils | Coil | 131 | 168 | - | - | |
Bma12g00657 | 231 | CDD | homeodomain | 76 | 133 | IPR001356 | GO:0003677 | |
Bma12g00657 | 231 | PRINTS | Lambda-repressor HTH signature | 103 | 112 | IPR000047 | GO:0003677 | |
Bma12g00657 | 231 | PRINTS | Lambda-repressor HTH signature | 112 | 128 | IPR000047 | GO:0003677 | |
Bma12g00657 | 231 | Gene3D | - | 80 | 130 | - | - | |
Bma12g00657 | 231 | MobiDBLite | consensus disorder prediction | 42 | 81 | - | - | |
Bma12g00657 | 231 | PANTHER | - | 3 | 221 | - | - | |
Bma12g00657 | 231 | ProSitePatterns | 'Homeobox' domain signature. | 107 | 130 | IPR017970 | GO:0000981|GO:0006355 | |
Bma12g00657 | 231 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Bma12g00657 | 231 | SMART | HOX_1 | 74 | 136 | IPR001356 | GO:0003677 | |
Bma12g00657 | 231 | Pfam | Homeobox associated leucine zipper | 132 | 166 | IPR003106 | GO:0006355|GO:0043565 | |
Bma12g00657 | 231 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 3 | 221 | - | - | |
Bma12g00657 | 231 | Pfam | Homeodomain | 76 | 130 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g00168 | Bma-Chr10:1446294 | Bma12g00657 | Bma-Chr12:27787469 | 1.73E-71 | dispersed | |
Bma12g00657 | Bma-Chr12:27787469 | Bma15g00444 | Bma-Chr15:4823091 | 3.90E-71 | dispersed | |
Bma12g00657 | Bma-Chr12:27787469 | Bma05g00746 | Bma-Chr5:43873071 | 3.51E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58122 | PF00046 | Homeodomain | 1.70E-16 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00657 | K09338 | - | zju:107430326 | 348.591 |