Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00658 ATGACTAATTTTGAGGAGGTTTGGGCGTTGAAGTATATCAAGCAGCATCTTCTAGGTGCAATTTCTCCTGTGGATGGCTTCTCACATGAGCTGAGTGAGTCTGTTTCTCATTGTCGTGGAATCGATAGGAATGGTGGAGCGAGTTCTGTTGTTTCGAGCTCTCTGTCTGATTCTATCTGTTCTAGATCTTCGATCTCTAGTTCTCCAATTGAAATCACGGAGTTCTTCGATTCCGATGCACTCTTTGAATTCTCTTCGACTTCGATTCAATTCGAGGAAAGGGAGAGTGTTTTTTCTGAATTTGAAATGAAGCCTAATGTCATCGATCTCTCAACTCCGAAACCGCATTGTAATTCGTTTGAATTCGATATCAAGGCTGAAGCTATTGAGATTGTTAGTTCAAATCCTCATTCAAGCAGCGATTTCTTTGAGTTCGAGCCAAAGCCTGAAAGTTTCAGTTTCGTCGCTCCGATTCGCTCGAATTCAATTCCTCAGCTGAATCGCAAACCTGATCTGAAAATCTCTCTTCCGAGCAAAACCGAATGGATCAATTTCTCGAATTCGAATCACCGACCGGAAGTTCCTCAAAATAACAACAATCGCAAGGCAACGGAGAAAATACACTACAGAGGAGTCCGGCGACGGCCATGGGGTAAGTTCGCCGCCGAGATCCGCGACCCGAACCGGCGCGGCTCTCGTGTCTGGCTCGGTACCTTCGACGCCGCCATCGACGCCGCCAAAGCGTACGATCGAGCTGCCTTCAAGCTTCGCGGCTCCAAAGCCATCCTCAACTTCCCTCTAGAAGCCGGAAAACAAGAGGCTGAAGCCGGCTACGGAAGAAAACGTCAACGGGAAGAAGACAAGGAAATTGCCATCCATCTTCCTGTGGCGGTGAAGAAGGAGAAGTCGACGGAGTCAATTGACGTCGTCAGTTATGTGAATGATCTACCATTGACGCCGTCAATTTGGTCAACAGTCTTGGACAGTGATGTGAAAGGAATATTCAACGTCCCGCCATTATCACCGTTATCTCCCCACCCGGCGTTAGGTTATCCCCAGCTCATGGTTCTCTAA 1074 47.58 MTNFEEVWALKYIKQHLLGAISPVDGFSHELSESVSHCRGIDRNGGASSVVSSSLSDSICSRSSISSSPIEITEFFDSDALFEFSSTSIQFEERESVFSEFEMKPNVIDLSTPKPHCNSFEFDIKAEAIEIVSSNPHSSSDFFEFEPKPESFSFVAPIRSNSIPQLNRKPDLKISLPSKTEWINFSNSNHRPEVPQNNNNRKATEKIHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFDAAIDAAKAYDRAAFKLRGSKAILNFPLEAGKQEAEAGYGRKRQREEDKEIAIHLPVAVKKEKSTESIDVVSYVNDLPLTPSIWSTVLDSDVKGIFNVPPLSPLSPHPALGYPQLMVL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27790718 27791791 - Bma007839.1 Bma12g00658 92084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00658 357 SUPERFAMILY DNA-binding domain 208 267 IPR016177 GO:0003677
Bma12g00658 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 342 - -
Bma12g00658 357 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 342 - -
Bma12g00658 357 Pfam AP2 domain 208 258 IPR001471 GO:0003700|GO:0006355
Bma12g00658 357 SMART rav1_2 208 272 IPR001471 GO:0003700|GO:0006355
Bma12g00658 357 Gene3D AP2/ERF domain 207 268 IPR036955 GO:0003700|GO:0006355
Bma12g00658 357 CDD AP2 208 266 IPR001471 GO:0003700|GO:0006355
Bma12g00658 357 PRINTS Ethylene responsive element binding protein signature 248 268 IPR001471 GO:0003700|GO:0006355
Bma12g00658 357 PRINTS Ethylene responsive element binding protein signature 209 220 IPR001471 GO:0003700|GO:0006355
Bma12g00658 357 ProSiteProfiles AP2/ERF domain profile. 208 266 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00658 Bma-Chr12:27790718 Bma12g00675 Bma-Chr12:27991851 0 dispersed
Bma12g00658 Bma-Chr12:27790718 Bma12g00674 Bma-Chr12:27964462 1.28E-27 wgd
Bma12g00658 Bma-Chr12:27790718 Bma05g00742 Bma-Chr5:43756219 2.40E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58123 PF00847 AP2 4.70E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00658 K09286 - zju:107430379 293.123