Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00674 ATGGTCCTCGCTGGAGTACTTCGCGACGCCGTAAATGTCGGTTGGGTACCGTCACTCACTTCATCATCGCCGGAAATCGGGGAATTTGAACTTTCGTTTGTGAAATCGGAGCCGGGGATCTTTCCTCCTCTGAACCAATTTCCGGACCAGGAGAAGGTACAAACGGTGCCGGCGGTAGTTCCGCCAAGAGGAAAGCATTACCGTGGGGTTCGACAGCGGCCGTGGGGAAAATTCGCCGCTGAAATTCGGGATTCGGCGAAGAATGGGGCAAGGGTTTGGCTCGGAACCTTCGAGACTGCTGAGGATGCAGCTTTAGCTTACGACCGAGCGGCGTACCGGATGCGCGGCTCAAAAGCCTTACTTAACTTTCCTCTCCGGATTAACTCCGGTGAACCCGACCCGATTAGAGTGACATCTAAGCGTTCTTCGCCGGAGCCATCGTCGTCCGGGGACAGTGGATCATCGCCTAAAAGGCGGAAGAAAGCGAACGTCTCGTCGCCTTCGCCGATCACGGCTCACCAAGAAGGACAAACAAGTAAAATTACTGCGGTGGAAGAATTACACGTAGTAAGCCACATAATGGTGTCCACACGTGGAGAAGAGCTATTGGTCAGTTAG 618 53.88 MVLAGVLRDAVNVGWVPSLTSSSPEIGEFELSFVKSEPGIFPPLNQFPDQEKVQTVPAVVPPRGKHYRGVRQRPWGKFAAEIRDSAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRINSGEPDPIRVTSKRSSPEPSSSGDSGSSPKRRKKANVSSPSPITAHQEGQTSKITAVEELHVVSHIMVSTRGEELLVS 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27964462 27965079 - Bma007859.1 Bma12g00674 92100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00674 205 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Bma12g00674 205 PANTHER DNA-BINDING DOMAIN 1 169 IPR044808 GO:0003700|GO:0009873
Bma12g00674 205 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Bma12g00674 205 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Bma12g00674 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2-LIKE 1 169 - -
Bma12g00674 205 MobiDBLite consensus disorder prediction 131 180 - -
Bma12g00674 205 Gene3D AP2/ERF domain 65 127 IPR036955 GO:0003700|GO:0006355
Bma12g00674 205 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Bma12g00674 205 MobiDBLite consensus disorder prediction 140 180 - -
Bma12g00674 205 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Bma12g00674 205 SUPERFAMILY DNA-binding domain 66 126 IPR016177 GO:0003677
Bma12g00674 205 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00742 Bma-Chr5:43756219 Bma12g00674 Bma-Chr12:27964462 2.17E-106 dispersed
Bma07g00915 Bma-Chr7:32987599 Bma12g00674 Bma-Chr12:27964462 5.73E-69 dispersed
Bma07g00916 Bma-Chr7:33008284 Bma12g00674 Bma-Chr12:27964462 6.03E-68 dispersed
Bma10g01124 Bma-Chr10:36177966 Bma12g00674 Bma-Chr12:27964462 6.79E-40 dispersed
Bma12g00674 Bma-Chr12:27964462 Bma12g01183 Bma-Chr12:44650113 1.02E-29 dispersed
Bma12g00674 Bma-Chr12:27964462 Bma12g00675 Bma-Chr12:27991851 1.27E-27 tandem
Bma12g00658 Bma-Chr12:27790718 Bma12g00674 Bma-Chr12:27964462 1.28E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58125 PF00847 AP2 1.10E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00674 K09286 - zju:107430378 214.157