Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00675 GATATGACTAATTTTGAGGAGGTTTGGGCGTTGAAGTATATCAAGCAGCATCTTCTAGGTGCAATTTCTCCTGTGGATGGCTTCTCACATGAGCTGAGTGAGTCTGTTTCTCATTGTCGTGGAATCGATAGGAATGGTGGAGCGAGTTCTGTTGTTTCGAGCTCTCTGTCTGATTCTATCTGTTCTAGATCTTCGATCTCTAGTTCTCCAATTGAAATCACGGAGTTCTTCGATTCCGATGCACTCTTTGAATTCTCTTCGACTTCGATTCAATTCGAGGAAAGGGAGAGTGTTTTTTCTGAATTTGAAATGAAGCCTAATGTCATCGATCTCTCAACTCCGAAACCGCATTGTAATTCGTTTGAATTCGATATCAAGGCTGAAGCTATTGAGATTGTTAGTTCAAATCCTCATTCAAGCAGCGATTTCTTTGAGTTCGAGCCAAAGCCTGAAAGTTTCAGTTTCGTCGCTCCGATTCGCTCGAATTCAATTCCTCAGCTGAATCGCAAACCTGATCTGAAAATCTCTCTTCCGAGCAAAACCGAATGGATCAATTTCTCGAATTCGAATCACCGACCGGAAGTTCCTCAAAATAACAACAATCGCAAGGCAACGGAGAAAATACACTACAGAGGAGTCCGGCGACGGCCATGGGGTAAGTTCGCCGCCGAGATCCGCGACCCGAACCGGCGCGGCTCTCGTGTCTGGCTCGGTACCTTCGACGCCGCCATCGACGCCGCCAAAGCGTACGATCGAGCTGCCTTCAAGCTTCGCGGCTCCAAAGCCATCCTCAACTTCCCTCTAGAAGCCGGAAAACAAGAGGCTGAAGCCGGCTACGGAAGAAAACGTCAACGGGAAGAAGACAAGGAAATTGCCATCCATCTTCCTGTGGCGGTGAAGAAGGAGAAGTCGACGGAGTCAATTGACGTCGTTAGTTATGTGAATGATCTACCATTGACGCCGTCAATTTGGTCAACAGTCTTGGACAGTGATGTGAAAGGAATATTCAACGTCCCGCCATTATCACCGTTATCGCCCCACCCGGCGTTAGGTTATCCCCAGCTCATGGTTCTCTAA 1077 47.54 DMTNFEEVWALKYIKQHLLGAISPVDGFSHELSESVSHCRGIDRNGGASSVVSSSLSDSICSRSSISSSPIEITEFFDSDALFEFSSTSIQFEERESVFSEFEMKPNVIDLSTPKPHCNSFEFDIKAEAIEIVSSNPHSSSDFFEFEPKPESFSFVAPIRSNSIPQLNRKPDLKISLPSKTEWINFSNSNHRPEVPQNNNNRKATEKIHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFDAAIDAAKAYDRAAFKLRGSKAILNFPLEAGKQEAEAGYGRKRQREEDKEIAIHLPVAVKKEKSTESIDVVSYVNDLPLTPSIWSTVLDSDVKGIFNVPPLSPLSPHPALGYPQLMVL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27991851 27992927 + Bma007861.1 Bma12g00675 92101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00675 358 SUPERFAMILY DNA-binding domain 209 268 IPR016177 GO:0003677
Bma12g00675 358 Gene3D AP2/ERF domain 208 269 IPR036955 GO:0003700|GO:0006355
Bma12g00675 358 CDD AP2 209 267 IPR001471 GO:0003700|GO:0006355
Bma12g00675 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 6 343 - -
Bma12g00675 358 ProSiteProfiles AP2/ERF domain profile. 209 267 IPR001471 GO:0003700|GO:0006355
Bma12g00675 358 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 343 - -
Bma12g00675 358 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Bma12g00675 358 PRINTS Ethylene responsive element binding protein signature 249 269 IPR001471 GO:0003700|GO:0006355
Bma12g00675 358 Pfam AP2 domain 209 259 IPR001471 GO:0003700|GO:0006355
Bma12g00675 358 SMART rav1_2 209 273 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00743 Bma-Chr5:43776381 Bma12g00675 Bma-Chr12:27991851 1.79E-152 dispersed
Bma12g00658 Bma-Chr12:27790718 Bma12g00675 Bma-Chr12:27991851 0 dispersed
Bma12g00675 Bma-Chr12:27991851 Bma12g01183 Bma-Chr12:44650113 2.17E-50 dispersed
Bma12g00674 Bma-Chr12:27964462 Bma12g00675 Bma-Chr12:27991851 1.27E-27 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58126 PF00847 AP2 4.70E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00675 K09286 - zju:107430379 293.123