Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00675 | GATATGACTAATTTTGAGGAGGTTTGGGCGTTGAAGTATATCAAGCAGCATCTTCTAGGTGCAATTTCTCCTGTGGATGGCTTCTCACATGAGCTGAGTGAGTCTGTTTCTCATTGTCGTGGAATCGATAGGAATGGTGGAGCGAGTTCTGTTGTTTCGAGCTCTCTGTCTGATTCTATCTGTTCTAGATCTTCGATCTCTAGTTCTCCAATTGAAATCACGGAGTTCTTCGATTCCGATGCACTCTTTGAATTCTCTTCGACTTCGATTCAATTCGAGGAAAGGGAGAGTGTTTTTTCTGAATTTGAAATGAAGCCTAATGTCATCGATCTCTCAACTCCGAAACCGCATTGTAATTCGTTTGAATTCGATATCAAGGCTGAAGCTATTGAGATTGTTAGTTCAAATCCTCATTCAAGCAGCGATTTCTTTGAGTTCGAGCCAAAGCCTGAAAGTTTCAGTTTCGTCGCTCCGATTCGCTCGAATTCAATTCCTCAGCTGAATCGCAAACCTGATCTGAAAATCTCTCTTCCGAGCAAAACCGAATGGATCAATTTCTCGAATTCGAATCACCGACCGGAAGTTCCTCAAAATAACAACAATCGCAAGGCAACGGAGAAAATACACTACAGAGGAGTCCGGCGACGGCCATGGGGTAAGTTCGCCGCCGAGATCCGCGACCCGAACCGGCGCGGCTCTCGTGTCTGGCTCGGTACCTTCGACGCCGCCATCGACGCCGCCAAAGCGTACGATCGAGCTGCCTTCAAGCTTCGCGGCTCCAAAGCCATCCTCAACTTCCCTCTAGAAGCCGGAAAACAAGAGGCTGAAGCCGGCTACGGAAGAAAACGTCAACGGGAAGAAGACAAGGAAATTGCCATCCATCTTCCTGTGGCGGTGAAGAAGGAGAAGTCGACGGAGTCAATTGACGTCGTTAGTTATGTGAATGATCTACCATTGACGCCGTCAATTTGGTCAACAGTCTTGGACAGTGATGTGAAAGGAATATTCAACGTCCCGCCATTATCACCGTTATCGCCCCACCCGGCGTTAGGTTATCCCCAGCTCATGGTTCTCTAA | 1077 | 47.54 | DMTNFEEVWALKYIKQHLLGAISPVDGFSHELSESVSHCRGIDRNGGASSVVSSSLSDSICSRSSISSSPIEITEFFDSDALFEFSSTSIQFEERESVFSEFEMKPNVIDLSTPKPHCNSFEFDIKAEAIEIVSSNPHSSSDFFEFEPKPESFSFVAPIRSNSIPQLNRKPDLKISLPSKTEWINFSNSNHRPEVPQNNNNRKATEKIHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFDAAIDAAKAYDRAAFKLRGSKAILNFPLEAGKQEAEAGYGRKRQREEDKEIAIHLPVAVKKEKSTESIDVVSYVNDLPLTPSIWSTVLDSDVKGIFNVPPLSPLSPHPALGYPQLMVL | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 27991851 | 27992927 | + | Bma007861.1 | Bma12g00675 | 92101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00675 | 358 | SUPERFAMILY | DNA-binding domain | 209 | 268 | IPR016177 | GO:0003677 | |
Bma12g00675 | 358 | Gene3D | AP2/ERF domain | 208 | 269 | IPR036955 | GO:0003700|GO:0006355 | |
Bma12g00675 | 358 | CDD | AP2 | 209 | 267 | IPR001471 | GO:0003700|GO:0006355 | |
Bma12g00675 | 358 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 | 6 | 343 | - | - | |
Bma12g00675 | 358 | ProSiteProfiles | AP2/ERF domain profile. | 209 | 267 | IPR001471 | GO:0003700|GO:0006355 | |
Bma12g00675 | 358 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 6 | 343 | - | - | |
Bma12g00675 | 358 | PRINTS | Ethylene responsive element binding protein signature | 210 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Bma12g00675 | 358 | PRINTS | Ethylene responsive element binding protein signature | 249 | 269 | IPR001471 | GO:0003700|GO:0006355 | |
Bma12g00675 | 358 | Pfam | AP2 domain | 209 | 259 | IPR001471 | GO:0003700|GO:0006355 | |
Bma12g00675 | 358 | SMART | rav1_2 | 209 | 273 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g00743 | Bma-Chr5:43776381 | Bma12g00675 | Bma-Chr12:27991851 | 1.79E-152 | dispersed | |
Bma12g00658 | Bma-Chr12:27790718 | Bma12g00675 | Bma-Chr12:27991851 | 0 | dispersed | |
Bma12g00675 | Bma-Chr12:27991851 | Bma12g01183 | Bma-Chr12:44650113 | 2.17E-50 | dispersed | |
Bma12g00674 | Bma-Chr12:27964462 | Bma12g00675 | Bma-Chr12:27991851 | 1.27E-27 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58126 | PF00847 | AP2 | 4.70E-14 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00675 | K09286 | - | zju:107430379 | 293.123 |