Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00676 | ATGCAGGTGAAGTTCACGGTCGAGAAGCTTCAACATATCATGGATTTCAAGCATAACATTCGCAATATGTCTGTTATTGCACATGTTGATCATGGAAAGTCAACACTGACCGACTCTCTAGTGGCTGCCGCTGGTATAATTGCACAAGAAGCTGCTGGCGATGTTAGGATTATGGATACACGTAAGGATGAGGCTGAACGTGGTATAACCATCAAATCCACTGGTATCTCTCTCTACTACGAGATGGAAGAGCAGACCTTGAAGAATTACCTAGGAGAGAGGCAGGGAAATGAATATCTCATCAATCTCATTGATTCTCCTGGCCATGTTGACTTCTCATCTGAGGTCACAGCTGCTCTGCGTATTACTGACGGTGCACTTGTGGTGGTGGACTGTGTGGAGGGGGTATGTGTCCAAACAGAAACGGTATTACGACAGGCTTTAGGAGAGAGGATTAGGCCAATTCTCACTCTTAACAAGATGGATAGGTGCTTCTTGGAACTTCAGATCGACGGGGAGGAAGCTTATCGGCTATTCCAAAGGGTTATCGAAAATACTAATGTGATTATGGCAACATATGAAGATCCCCTCCTTGGTGATGTTCAGGTCTACCCTGAGAAAGGGACAGTTTCCTTCTCTGCTGGTTTGCATGGTTGGGCTTTCACTCTTACAAACTTTGCAAAGATGTATGCCTCTAAATTTGGGGTTGATGAGGCAAAAATGATGGAGCGTCTTTGGGGAGAGAATTTCTATGACCCTTCAACGAAAAAATGGACCAGCAAAAATACTGGTTCTCCTACTTGCAAGCGTGGCTTTGTTCAACTCTGCTACGAACCTATCATGCGGATTATTTCAATTTGCTTGAGGGAGCAGAAGGATGAGTTGTGGCCATTGTTGCAAAAGCTTGGAGTAGTTATCAAGGCTGAAGAGAGAGATCTAAGAGGGAAGGCGTTGATGAAGCGAGTCATGCAGACATGGCTGCCAGCAAGCAATGCACTATTGGAAATGATGATCTTTCATCTACCTTCACCTGCGAAGGCTCAAAAGTACCGTGTCGAGAACTTGTACGAGGGACCTATGGACGACATTTATGCTAATGCTATTAGAAATTGTGACCCTGATGGCCCTCTCATGCTTTACGTGTCAAAAATGATTCCAGCCTCAGATAAAGGACGATTTTTTGCTTTCGGCCGAGTCTTCTCCGGTAAAGTCTCAACTGGAATGAAGGTTAGAATCATGGGTCCGAATTATGTCCCTGGGAATTGGCAAAAAAAGGACTTGTACGTGAAGAGTGTGCAGAGAACTGTGATTTGGATGGGAAAGAAGCAGGAAACTGTGGAGGAAGTTCCTTGCGGTAACATTGTTGCAATGGTTGGTTTGGACCAGTTCATCACAAAAAATGCTACTTTGACAAATGAAAAGGAAGTCGGTGCTCATTCAATCCGAGCAATGAAGTTTTCAGTTTCGCCTGTTGTGCGCGTTGCAATTCAGTGCAAGGTGGCTTCTGACCTTCCCAAACTTGTTGAAGGTCTGAAGCGCCTCGAAAAATCTGATCCCATGGTTGTTTGTGAAATTGAGGAGTCTGGCGAGTACATTGTGGCCGGTGCAGGCGAACTCCACCTCGAGATATGCTTGAAAGATCTGCAAGAAGATTTCATGGGAGGAGCTGAGATCATAAAATCTGATCCTGTTGTTTCTTTTCGCGAAACTGTCTCCGAGAGGTCCAGCCGCGTTGTGATGAGTAAATCGCCGAACAAACACAACCGCTTATACATGGAAGCGCGTCCGATGGAGGAAGGACTTGCGGAAGCCATTGATGGCGGACGAATCAGTCCAAGAGATGACCCAAAGGCTCGGTCGAAGATCATGTCAGACGCTTTTGGCTGGGACAAGGAAAAGACTAAGAAGATTTGGTGCTTCGACCCGGAGACCACCGGCCCTAACATAGTTGTTAATATGTGTAAAGGGGTTGACTACCTTAATGAAATTAAAGATTCTGTAACTCTTGGTTTCCAGTGGGCTTCCAAGGAAGGAGCATTGGCTGAAGAAAACATGAGGGGTATCTGCTTTGAGCTCTGTGATACAGTTCTTCACTCTGATGGAATTCACAGAGGAGGTGGTCAGATCATTCCGACTGCTAGGCGTGTCGTCTATGCCGCCCAACTGACAGCCAAACCCAGGTTCTTAGAGCCTGTGTACTTGGTGGAAATCCAGGCTTCTGAGCAAGCTCTGGGCGGTGTTTACAGTGTTCTTAACCAGAGACGTGGACATGTTTTCGAAGAATTACAGCGGCCGGGCACTCCGTTGTACAACGTCAAGGCATACCTGCCTGTCATCGAGTCGTTTGGATTCTCGAATATGCTGAGAGCTGCAACTTCTGGACAGGCTTTTCCGCAAGCCGTGTTTGATCATTGGGAAATCATGCCGTCTGATCCATTAGAAGATGGAACTCCGGCTGCAAAGCTTGCTGCCAAAGTCCGGAAGAGGAAAGGCTTGAGAGAACAGAGAACCCCACTCTCTGAGTACGAGGACAAGCTGTAG | 2541 | 46.52 | MQVKFTVEKLQHIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEAAGDVRIMDTRKDEAERGITIKSTGISLYYEMEEQTLKNYLGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPILTLNKMDRCFLELQIDGEEAYRLFQRVIENTNVIMATYEDPLLGDVQVYPEKGTVSFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFYDPSTKKWTSKNTGSPTCKRGFVQLCYEPIMRIISICLREQKDELWPLLQKLGVVIKAEERDLRGKALMKRVMQTWLPASNALLEMMIFHLPSPAKAQKYRVENLYEGPMDDIYANAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGNWQKKDLYVKSVQRTVIWMGKKQETVEEVPCGNIVAMVGLDQFITKNATLTNEKEVGAHSIRAMKFSVSPVVRVAIQCKVASDLPKLVEGLKRLEKSDPMVVCEIEESGEYIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVSERSSRVVMSKSPNKHNRLYMEARPMEEGLAEAIDGGRISPRDDPKARSKIMSDAFGWDKEKTKKIWCFDPETTGPNIVVNMCKGVDYLNEIKDSVTLGFQWASKEGALAEENMRGICFELCDTVLHSDGIHRGGGQIIPTARRVVYAAQLTAKPRFLEPVYLVEIQASEQALGGVYSVLNQRRGHVFEELQRPGTPLYNVKAYLPVIESFGFSNMLRAATSGQAFPQAVFDHWEIMPSDPLEDGTPAAKLAAKVRKRKGLREQRTPLSEYEDKL | 846 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 28181679 | 28184581 | + | Bma007865.1 | Bma12g00676 | 92102 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00676 | 846 | Gene3D | - | 4 | 238 | IPR027417 | - | |
Bma12g00676 | 846 | CDD | EF2 | 21 | 231 | - | - | |
Bma12g00676 | 846 | Pfam | Elongation factor Tu GTP binding domain | 18 | 343 | IPR000795 | GO:0003924|GO:0005525 | |
Bma12g00676 | 846 | CDD | eEF2_snRNP_like_C | 730 | 809 | - | - | |
Bma12g00676 | 846 | Pfam | Elongation factor G C-terminus | 728 | 814 | IPR000640 | - | |
Bma12g00676 | 846 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 18 | 345 | IPR000795 | GO:0003924|GO:0005525 | |
Bma12g00676 | 846 | SMART | EFG_C_a | 727 | 816 | IPR000640 | - | |
Bma12g00676 | 846 | Pfam | Elongation factor Tu domain 2 | 395 | 470 | IPR004161 | GO:0005525 | |
Bma12g00676 | 846 | Pfam | Elongation factor G, domain IV | 609 | 725 | IPR005517 | GO:0005525 | |
Bma12g00676 | 846 | Gene3D | Translation factors | 344 | 487 | - | - | |
Bma12g00676 | 846 | SUPERFAMILY | Translation proteins | 343 | 475 | IPR009000 | - | |
Bma12g00676 | 846 | Gene3D | - | 572 | 725 | IPR014721 | - | |
Bma12g00676 | 846 | CDD | aeEF2_snRNP_like_IV | 562 | 734 | - | - | |
Bma12g00676 | 846 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 59 | 74 | IPR031157 | - | |
Bma12g00676 | 846 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 3 | 845 | - | - | |
Bma12g00676 | 846 | CDD | EF2_II | 376 | 473 | - | - | |
Bma12g00676 | 846 | Gene3D | - | 726 | 846 | - | - | |
Bma12g00676 | 846 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 489 | 566 | - | - | |
Bma12g00676 | 846 | CDD | EF2_snRNP_III | 490 | 562 | - | - | |
Bma12g00676 | 846 | PRINTS | GTP-binding elongation factor signature | 118 | 129 | IPR000795 | GO:0003924|GO:0005525 | |
Bma12g00676 | 846 | PRINTS | GTP-binding elongation factor signature | 66 | 74 | IPR000795 | GO:0003924|GO:0005525 | |
Bma12g00676 | 846 | PRINTS | GTP-binding elongation factor signature | 102 | 112 | IPR000795 | GO:0003924|GO:0005525 | |
Bma12g00676 | 846 | PRINTS | GTP-binding elongation factor signature | 154 | 163 | IPR000795 | GO:0003924|GO:0005525 | |
Bma12g00676 | 846 | PRINTS | GTP-binding elongation factor signature | 22 | 35 | IPR000795 | GO:0003924|GO:0005525 | |
Bma12g00676 | 846 | SUPERFAMILY | EF-G C-terminal domain-like | 730 | 837 | IPR035647 | - | |
Bma12g00676 | 846 | PANTHER | - | 3 | 845 | - | - | |
Bma12g00676 | 846 | SUPERFAMILY | EF-G C-terminal domain-like | 487 | 563 | IPR035647 | - | |
Bma12g00676 | 846 | MobiDBLite | consensus disorder prediction | 824 | 846 | - | - | |
Bma12g00676 | 846 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 5 | 342 | IPR027417 | - | |
Bma12g00676 | 846 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 565 | 729 | IPR020568 | - | |
Bma12g00676 | 846 | TIGRFAM | small_GTP: small GTP-binding protein domain | 21 | 165 | IPR005225 | GO:0005525 | |
Bma12g00676 | 846 | SMART | EFG_IV_2 | 609 | 725 | IPR005517 | GO:0005525 | |
Bma12g00676 | 846 | Pfam | Elongation Factor G, domain III | 490 | 552 | IPR041095 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00960 | Bma-Chr4:14907737 | Bma12g00676 | Bma-Chr12:28181679 | 1.72E-17 | dispersed | |
Bma08g00520 | Bma-Chr8:28220963 | Bma12g00676 | Bma-Chr12:28181679 | 0 | dispersed | |
Bma08g00521 | Bma-Chr8:28468068 | Bma12g00676 | Bma-Chr12:28181679 | 0 | dispersed | |
Bma12g00676 | Bma-Chr12:28181679 | Bma14g00797 | Bma-Chr14:8929788 | 2.98E-24 | dispersed | |
Bma12g00676 | Bma-Chr12:28181679 | Bma01g00285 | Bma-Chr1:2391105 | 4.87E-71 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00676 | K03234 | - | tcc:18594569 | 1509.2 |