Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00676 ATGCAGGTGAAGTTCACGGTCGAGAAGCTTCAACATATCATGGATTTCAAGCATAACATTCGCAATATGTCTGTTATTGCACATGTTGATCATGGAAAGTCAACACTGACCGACTCTCTAGTGGCTGCCGCTGGTATAATTGCACAAGAAGCTGCTGGCGATGTTAGGATTATGGATACACGTAAGGATGAGGCTGAACGTGGTATAACCATCAAATCCACTGGTATCTCTCTCTACTACGAGATGGAAGAGCAGACCTTGAAGAATTACCTAGGAGAGAGGCAGGGAAATGAATATCTCATCAATCTCATTGATTCTCCTGGCCATGTTGACTTCTCATCTGAGGTCACAGCTGCTCTGCGTATTACTGACGGTGCACTTGTGGTGGTGGACTGTGTGGAGGGGGTATGTGTCCAAACAGAAACGGTATTACGACAGGCTTTAGGAGAGAGGATTAGGCCAATTCTCACTCTTAACAAGATGGATAGGTGCTTCTTGGAACTTCAGATCGACGGGGAGGAAGCTTATCGGCTATTCCAAAGGGTTATCGAAAATACTAATGTGATTATGGCAACATATGAAGATCCCCTCCTTGGTGATGTTCAGGTCTACCCTGAGAAAGGGACAGTTTCCTTCTCTGCTGGTTTGCATGGTTGGGCTTTCACTCTTACAAACTTTGCAAAGATGTATGCCTCTAAATTTGGGGTTGATGAGGCAAAAATGATGGAGCGTCTTTGGGGAGAGAATTTCTATGACCCTTCAACGAAAAAATGGACCAGCAAAAATACTGGTTCTCCTACTTGCAAGCGTGGCTTTGTTCAACTCTGCTACGAACCTATCATGCGGATTATTTCAATTTGCTTGAGGGAGCAGAAGGATGAGTTGTGGCCATTGTTGCAAAAGCTTGGAGTAGTTATCAAGGCTGAAGAGAGAGATCTAAGAGGGAAGGCGTTGATGAAGCGAGTCATGCAGACATGGCTGCCAGCAAGCAATGCACTATTGGAAATGATGATCTTTCATCTACCTTCACCTGCGAAGGCTCAAAAGTACCGTGTCGAGAACTTGTACGAGGGACCTATGGACGACATTTATGCTAATGCTATTAGAAATTGTGACCCTGATGGCCCTCTCATGCTTTACGTGTCAAAAATGATTCCAGCCTCAGATAAAGGACGATTTTTTGCTTTCGGCCGAGTCTTCTCCGGTAAAGTCTCAACTGGAATGAAGGTTAGAATCATGGGTCCGAATTATGTCCCTGGGAATTGGCAAAAAAAGGACTTGTACGTGAAGAGTGTGCAGAGAACTGTGATTTGGATGGGAAAGAAGCAGGAAACTGTGGAGGAAGTTCCTTGCGGTAACATTGTTGCAATGGTTGGTTTGGACCAGTTCATCACAAAAAATGCTACTTTGACAAATGAAAAGGAAGTCGGTGCTCATTCAATCCGAGCAATGAAGTTTTCAGTTTCGCCTGTTGTGCGCGTTGCAATTCAGTGCAAGGTGGCTTCTGACCTTCCCAAACTTGTTGAAGGTCTGAAGCGCCTCGAAAAATCTGATCCCATGGTTGTTTGTGAAATTGAGGAGTCTGGCGAGTACATTGTGGCCGGTGCAGGCGAACTCCACCTCGAGATATGCTTGAAAGATCTGCAAGAAGATTTCATGGGAGGAGCTGAGATCATAAAATCTGATCCTGTTGTTTCTTTTCGCGAAACTGTCTCCGAGAGGTCCAGCCGCGTTGTGATGAGTAAATCGCCGAACAAACACAACCGCTTATACATGGAAGCGCGTCCGATGGAGGAAGGACTTGCGGAAGCCATTGATGGCGGACGAATCAGTCCAAGAGATGACCCAAAGGCTCGGTCGAAGATCATGTCAGACGCTTTTGGCTGGGACAAGGAAAAGACTAAGAAGATTTGGTGCTTCGACCCGGAGACCACCGGCCCTAACATAGTTGTTAATATGTGTAAAGGGGTTGACTACCTTAATGAAATTAAAGATTCTGTAACTCTTGGTTTCCAGTGGGCTTCCAAGGAAGGAGCATTGGCTGAAGAAAACATGAGGGGTATCTGCTTTGAGCTCTGTGATACAGTTCTTCACTCTGATGGAATTCACAGAGGAGGTGGTCAGATCATTCCGACTGCTAGGCGTGTCGTCTATGCCGCCCAACTGACAGCCAAACCCAGGTTCTTAGAGCCTGTGTACTTGGTGGAAATCCAGGCTTCTGAGCAAGCTCTGGGCGGTGTTTACAGTGTTCTTAACCAGAGACGTGGACATGTTTTCGAAGAATTACAGCGGCCGGGCACTCCGTTGTACAACGTCAAGGCATACCTGCCTGTCATCGAGTCGTTTGGATTCTCGAATATGCTGAGAGCTGCAACTTCTGGACAGGCTTTTCCGCAAGCCGTGTTTGATCATTGGGAAATCATGCCGTCTGATCCATTAGAAGATGGAACTCCGGCTGCAAAGCTTGCTGCCAAAGTCCGGAAGAGGAAAGGCTTGAGAGAACAGAGAACCCCACTCTCTGAGTACGAGGACAAGCTGTAG 2541 46.52 MQVKFTVEKLQHIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEAAGDVRIMDTRKDEAERGITIKSTGISLYYEMEEQTLKNYLGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPILTLNKMDRCFLELQIDGEEAYRLFQRVIENTNVIMATYEDPLLGDVQVYPEKGTVSFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFYDPSTKKWTSKNTGSPTCKRGFVQLCYEPIMRIISICLREQKDELWPLLQKLGVVIKAEERDLRGKALMKRVMQTWLPASNALLEMMIFHLPSPAKAQKYRVENLYEGPMDDIYANAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGNWQKKDLYVKSVQRTVIWMGKKQETVEEVPCGNIVAMVGLDQFITKNATLTNEKEVGAHSIRAMKFSVSPVVRVAIQCKVASDLPKLVEGLKRLEKSDPMVVCEIEESGEYIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVSERSSRVVMSKSPNKHNRLYMEARPMEEGLAEAIDGGRISPRDDPKARSKIMSDAFGWDKEKTKKIWCFDPETTGPNIVVNMCKGVDYLNEIKDSVTLGFQWASKEGALAEENMRGICFELCDTVLHSDGIHRGGGQIIPTARRVVYAAQLTAKPRFLEPVYLVEIQASEQALGGVYSVLNQRRGHVFEELQRPGTPLYNVKAYLPVIESFGFSNMLRAATSGQAFPQAVFDHWEIMPSDPLEDGTPAAKLAAKVRKRKGLREQRTPLSEYEDKL 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28181679 28184581 + Bma007865.1 Bma12g00676 92102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00676 846 Gene3D - 4 238 IPR027417 -
Bma12g00676 846 CDD EF2 21 231 - -
Bma12g00676 846 Pfam Elongation factor Tu GTP binding domain 18 343 IPR000795 GO:0003924|GO:0005525
Bma12g00676 846 CDD eEF2_snRNP_like_C 730 809 - -
Bma12g00676 846 Pfam Elongation factor G C-terminus 728 814 IPR000640 -
Bma12g00676 846 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 18 345 IPR000795 GO:0003924|GO:0005525
Bma12g00676 846 SMART EFG_C_a 727 816 IPR000640 -
Bma12g00676 846 Pfam Elongation factor Tu domain 2 395 470 IPR004161 GO:0005525
Bma12g00676 846 Pfam Elongation factor G, domain IV 609 725 IPR005517 GO:0005525
Bma12g00676 846 Gene3D Translation factors 344 487 - -
Bma12g00676 846 SUPERFAMILY Translation proteins 343 475 IPR009000 -
Bma12g00676 846 Gene3D - 572 725 IPR014721 -
Bma12g00676 846 CDD aeEF2_snRNP_like_IV 562 734 - -
Bma12g00676 846 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 59 74 IPR031157 -
Bma12g00676 846 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 3 845 - -
Bma12g00676 846 CDD EF2_II 376 473 - -
Bma12g00676 846 Gene3D - 726 846 - -
Bma12g00676 846 Gene3D Elongation Factor G (Translational Gtpase), domain 3 489 566 - -
Bma12g00676 846 CDD EF2_snRNP_III 490 562 - -
Bma12g00676 846 PRINTS GTP-binding elongation factor signature 118 129 IPR000795 GO:0003924|GO:0005525
Bma12g00676 846 PRINTS GTP-binding elongation factor signature 66 74 IPR000795 GO:0003924|GO:0005525
Bma12g00676 846 PRINTS GTP-binding elongation factor signature 102 112 IPR000795 GO:0003924|GO:0005525
Bma12g00676 846 PRINTS GTP-binding elongation factor signature 154 163 IPR000795 GO:0003924|GO:0005525
Bma12g00676 846 PRINTS GTP-binding elongation factor signature 22 35 IPR000795 GO:0003924|GO:0005525
Bma12g00676 846 SUPERFAMILY EF-G C-terminal domain-like 730 837 IPR035647 -
Bma12g00676 846 PANTHER - 3 845 - -
Bma12g00676 846 SUPERFAMILY EF-G C-terminal domain-like 487 563 IPR035647 -
Bma12g00676 846 MobiDBLite consensus disorder prediction 824 846 - -
Bma12g00676 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 342 IPR027417 -
Bma12g00676 846 SUPERFAMILY Ribosomal protein S5 domain 2-like 565 729 IPR020568 -
Bma12g00676 846 TIGRFAM small_GTP: small GTP-binding protein domain 21 165 IPR005225 GO:0005525
Bma12g00676 846 SMART EFG_IV_2 609 725 IPR005517 GO:0005525
Bma12g00676 846 Pfam Elongation Factor G, domain III 490 552 IPR041095 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00960 Bma-Chr4:14907737 Bma12g00676 Bma-Chr12:28181679 1.72E-17 dispersed
Bma08g00520 Bma-Chr8:28220963 Bma12g00676 Bma-Chr12:28181679 0 dispersed
Bma08g00521 Bma-Chr8:28468068 Bma12g00676 Bma-Chr12:28181679 0 dispersed
Bma12g00676 Bma-Chr12:28181679 Bma14g00797 Bma-Chr14:8929788 2.98E-24 dispersed
Bma12g00676 Bma-Chr12:28181679 Bma01g00285 Bma-Chr1:2391105 4.87E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00676 K03234 - tcc:18594569 1509.2