Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00683 CAGAGTTCGCCGGAGGCTGAGTTTTTCTCCGAATATAGTGATGCTAACAGATACAAAATTCAGGAAGTTATTGGAAAAGGAAGTTATGGGGTTGTTTGTTCAGCTATCGACACCTATAGTGGTGAAAAGGTTGCTATAAAGAAGATCCATGATATTTTTGAACATATATCGGATGCTGCTCGTATTCTTCGCGAGGTGAAGTTGCTCAGACTTCTTCGTCATCCTGATATTGTTGAAATCAAACATATTATGTTACCATCTTCGAGAAGGGACTTCAAAGATATTTATGTTGTTTTTGAGCTGATGGAGTCAGATCTTCATCAAGTTATAAAAGCCAATGATGATCTAACACGAGAGCACCATCAGTTTTTTCTTTACCAACTACTCCGAGCATTGAAGTATATTCATACAGCAAATGTTTACCATCGAGATCTTAAACCTAAGAATATATTGGCTAATGCAAATTGCAAACTTAAGATCTGTGATTTTGGATTGGCTAGAGTTGCATTCAATGATACACCAATGACGATATTTTGGACGGACTATGTTGCTACTAGATGGTATCGAGCTCCAGAGCTATGTGGTTCATTTTTCTCCAAGTATACACCTGCAATTGATATCTGGAGTATAGGCTGCATATTTGCTGAAGTATTATTGGGGAAGCCACTTTTTCCTGGTAAAAATGTAGTTCACCAGCTTGACTTGATGACTGATCTACTTGGAACGCCTTCATTAGATACAATCTTAAGGGTGAGGAATGATAAGGCTAGGAGATACTTAACTAGTATGAGAAAAAAGGAGCCTGTGCCATTTGCTCAAAAGTTTCCAAATGCTGATCCTCTAGCTCTGGGACTACTCCAAAGATTGCTTGCTTTTGATCCAAAGGATCGGCCAACTGCTGAAGAGGCGCTAGCTGATCCATACTTCAAGCGACTGGCCAAAATAGAAAGGGAACCTTCCTGCCAACCAATTACAAAGATGGAATTTGAATTTGAGAGACGAAGGGTCACAAAAGAGGATATCAGAGAGCTCATATACCGCGAGATACTAGAGTACCATCCACAACTACTGAAAAACTATACAACTGGAACTGGGAGAACAAACTTTCTTTATCCAAGTGCCGTCGATCAATTTAGAAAGCAGTTCGCAGATCTTGAAGAAAATGGTGGTAGAAGTGCGCCCGTGATTCCTCTTGAAAGAAAACACACATCATTACCTAGGTCTTCTACTTTAGAAGCACATATTCCTATGAAAGAGCAGTCCAACAATGTCTCCCTCAAGGACATGAAGGCTCAAGAAGAGGCACGCAATAAACATTCCAGAAAGGCAGAAGTGAATAGTAATTATGCAAGAAATTTTCAACCTCCAGAAACAAATCCAGTTGCAAAACCAGGAAGAATCGTCGGGCCTATTTTACCATATGACAATGGAAGTGTCATGAAAGATGGCCATACCCACGACTCGAGAATATTTATGGGAAGTGGAATCATTCAGCCTCAAGCTCCACCTCCTGGTTATTACCCATCTTTGCAAGCCAAACAACTTCCTCAGAGTAATATGGTGCCAAAATTAGCACCTGATGTAGCAATCAACATCGACTCCAATCCCTTTTTCATGACACGAGCCGGGGTGATCAAGAGGGACCACCATGATTCAATTGCTATTGATCCCAACTTTTTGCACGCAACTGCTCAGTATAGTGGTGCTGCAACTGCTCAAAGAAAGGTCGGGACTGTCCAGATTGGTCTGACAGGGATGTATTAG 1764 40.99 QSSPEAEFFSEYSDANRYKIQEVIGKGSYGVVCSAIDTYSGEKVAIKKIHDIFEHISDAARILREVKLLRLLRHPDIVEIKHIMLPSSRRDFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPMTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLLGKPLFPGKNVVHQLDLMTDLLGTPSLDTILRVRNDKARRYLTSMRKKEPVPFAQKFPNADPLALGLLQRLLAFDPKDRPTAEEALADPYFKRLAKIEREPSCQPITKMEFEFERRRVTKEDIRELIYREILEYHPQLLKNYTTGTGRTNFLYPSAVDQFRKQFADLEENGGRSAPVIPLERKHTSLPRSSTLEAHIPMKEQSNNVSLKDMKAQEEARNKHSRKAEVNSNYARNFQPPETNPVAKPGRIVGPILPYDNGSVMKDGHTHDSRIFMGSGIIQPQAPPPGYYPSLQAKQLPQSNMVPKLAPDVAINIDSNPFFMTRAGVIKRDHHDSIAIDPNFLHATAQYSGAATAQRKVGTVQIGLTGMY 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28416798 28419822 + Bma007874.1 Bma12g00683 92109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00683 587 Gene3D Phosphorylase Kinase; domain 1 33 355 - -
Bma12g00683 587 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 478 - -
Bma12g00683 587 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Bma12g00683 587 MobiDBLite consensus disorder prediction 432 466 - -
Bma12g00683 587 SUPERFAMILY Protein kinase-like (PK-like) 14 313 IPR011009 -
Bma12g00683 587 ProSitePatterns MAP kinase signature. 53 156 IPR003527 GO:0004707|GO:0005524|GO:0006468
Bma12g00683 587 Pfam Protein kinase domain 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00683 587 SMART serkin_6 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00683 587 CDD STKc_TDY_MAPK 17 354 - -
Bma12g00683 587 Gene3D Transferase(Phosphotransferase) domain 1 104 332 - -
Bma12g00683 587 ProSiteProfiles Protein kinase domain profile. 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00683 587 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01325 Bma-Chr3:26540777 Bma12g00683 Bma-Chr12:28416798 7.08E-06 dispersed
Bma10g00465 Bma-Chr10:5263625 Bma12g00683 Bma-Chr12:28416798 0 dispersed
Bma12g00683 Bma-Chr12:28416798 Bma12g01235 Bma-Chr12:45319995 0 dispersed
Bma12g00683 Bma-Chr12:28416798 Bma14g01860 Bma-Chr14:39982154 2.30E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66816 PF00069 Pkinase 3.60E-65 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00683 - - fve:101306152 907.516