Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00683 | CAGAGTTCGCCGGAGGCTGAGTTTTTCTCCGAATATAGTGATGCTAACAGATACAAAATTCAGGAAGTTATTGGAAAAGGAAGTTATGGGGTTGTTTGTTCAGCTATCGACACCTATAGTGGTGAAAAGGTTGCTATAAAGAAGATCCATGATATTTTTGAACATATATCGGATGCTGCTCGTATTCTTCGCGAGGTGAAGTTGCTCAGACTTCTTCGTCATCCTGATATTGTTGAAATCAAACATATTATGTTACCATCTTCGAGAAGGGACTTCAAAGATATTTATGTTGTTTTTGAGCTGATGGAGTCAGATCTTCATCAAGTTATAAAAGCCAATGATGATCTAACACGAGAGCACCATCAGTTTTTTCTTTACCAACTACTCCGAGCATTGAAGTATATTCATACAGCAAATGTTTACCATCGAGATCTTAAACCTAAGAATATATTGGCTAATGCAAATTGCAAACTTAAGATCTGTGATTTTGGATTGGCTAGAGTTGCATTCAATGATACACCAATGACGATATTTTGGACGGACTATGTTGCTACTAGATGGTATCGAGCTCCAGAGCTATGTGGTTCATTTTTCTCCAAGTATACACCTGCAATTGATATCTGGAGTATAGGCTGCATATTTGCTGAAGTATTATTGGGGAAGCCACTTTTTCCTGGTAAAAATGTAGTTCACCAGCTTGACTTGATGACTGATCTACTTGGAACGCCTTCATTAGATACAATCTTAAGGGTGAGGAATGATAAGGCTAGGAGATACTTAACTAGTATGAGAAAAAAGGAGCCTGTGCCATTTGCTCAAAAGTTTCCAAATGCTGATCCTCTAGCTCTGGGACTACTCCAAAGATTGCTTGCTTTTGATCCAAAGGATCGGCCAACTGCTGAAGAGGCGCTAGCTGATCCATACTTCAAGCGACTGGCCAAAATAGAAAGGGAACCTTCCTGCCAACCAATTACAAAGATGGAATTTGAATTTGAGAGACGAAGGGTCACAAAAGAGGATATCAGAGAGCTCATATACCGCGAGATACTAGAGTACCATCCACAACTACTGAAAAACTATACAACTGGAACTGGGAGAACAAACTTTCTTTATCCAAGTGCCGTCGATCAATTTAGAAAGCAGTTCGCAGATCTTGAAGAAAATGGTGGTAGAAGTGCGCCCGTGATTCCTCTTGAAAGAAAACACACATCATTACCTAGGTCTTCTACTTTAGAAGCACATATTCCTATGAAAGAGCAGTCCAACAATGTCTCCCTCAAGGACATGAAGGCTCAAGAAGAGGCACGCAATAAACATTCCAGAAAGGCAGAAGTGAATAGTAATTATGCAAGAAATTTTCAACCTCCAGAAACAAATCCAGTTGCAAAACCAGGAAGAATCGTCGGGCCTATTTTACCATATGACAATGGAAGTGTCATGAAAGATGGCCATACCCACGACTCGAGAATATTTATGGGAAGTGGAATCATTCAGCCTCAAGCTCCACCTCCTGGTTATTACCCATCTTTGCAAGCCAAACAACTTCCTCAGAGTAATATGGTGCCAAAATTAGCACCTGATGTAGCAATCAACATCGACTCCAATCCCTTTTTCATGACACGAGCCGGGGTGATCAAGAGGGACCACCATGATTCAATTGCTATTGATCCCAACTTTTTGCACGCAACTGCTCAGTATAGTGGTGCTGCAACTGCTCAAAGAAAGGTCGGGACTGTCCAGATTGGTCTGACAGGGATGTATTAG | 1764 | 40.99 | QSSPEAEFFSEYSDANRYKIQEVIGKGSYGVVCSAIDTYSGEKVAIKKIHDIFEHISDAARILREVKLLRLLRHPDIVEIKHIMLPSSRRDFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPMTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLLGKPLFPGKNVVHQLDLMTDLLGTPSLDTILRVRNDKARRYLTSMRKKEPVPFAQKFPNADPLALGLLQRLLAFDPKDRPTAEEALADPYFKRLAKIEREPSCQPITKMEFEFERRRVTKEDIRELIYREILEYHPQLLKNYTTGTGRTNFLYPSAVDQFRKQFADLEENGGRSAPVIPLERKHTSLPRSSTLEAHIPMKEQSNNVSLKDMKAQEEARNKHSRKAEVNSNYARNFQPPETNPVAKPGRIVGPILPYDNGSVMKDGHTHDSRIFMGSGIIQPQAPPPGYYPSLQAKQLPQSNMVPKLAPDVAINIDSNPFFMTRAGVIKRDHHDSIAIDPNFLHATAQYSGAATAQRKVGTVQIGLTGMY | 587 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 28416798 | 28419822 | + | Bma007874.1 | Bma12g00683 | 92109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00683 | 587 | Gene3D | Phosphorylase Kinase; domain 1 | 33 | 355 | - | - | |
Bma12g00683 | 587 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 5 | 478 | - | - | |
Bma12g00683 | 587 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 48 | IPR017441 | GO:0005524 | |
Bma12g00683 | 587 | MobiDBLite | consensus disorder prediction | 432 | 466 | - | - | |
Bma12g00683 | 587 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 313 | IPR011009 | - | |
Bma12g00683 | 587 | ProSitePatterns | MAP kinase signature. | 53 | 156 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Bma12g00683 | 587 | Pfam | Protein kinase domain | 18 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00683 | 587 | SMART | serkin_6 | 18 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00683 | 587 | CDD | STKc_TDY_MAPK | 17 | 354 | - | - | |
Bma12g00683 | 587 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 332 | - | - | |
Bma12g00683 | 587 | ProSiteProfiles | Protein kinase domain profile. | 18 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00683 | 587 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 5 | 478 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g01325 | Bma-Chr3:26540777 | Bma12g00683 | Bma-Chr12:28416798 | 7.08E-06 | dispersed | |
Bma10g00465 | Bma-Chr10:5263625 | Bma12g00683 | Bma-Chr12:28416798 | 0 | dispersed | |
Bma12g00683 | Bma-Chr12:28416798 | Bma12g01235 | Bma-Chr12:45319995 | 0 | dispersed | |
Bma12g00683 | Bma-Chr12:28416798 | Bma14g01860 | Bma-Chr14:39982154 | 2.30E-116 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66816 | PF00069 | Pkinase | 3.60E-65 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00683 | - | - | fve:101306152 | 907.516 |