Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00686 ATGGAGGGATCTGCCTCTTCCCAGAAGAAAATGGGAAGAGGAAAGATTGAGATTAAGCGAATCGAAAACATGACGAATCGACAAGTTACCTTCTGTAAGAGGCGCAATGGGTTGCTGAAGAAAGCCTATGAACTGTCTGTTTTGTGTGATGCAGAAGTCGCCCTCATCGTCTTCTCCACCCGCGGTCGCCTCTATGAGTATGCAAATAACAGTGTGAGAGGGACTATAGAAAGGTACAAGAAGGCCTGCTCAGACTCTTCCAACACAGCCACTGTTGCTGAAACAAATACTCAGTTCTACCAGCACGAAGCAACCAAATTGAGAAGACAAATCCGAGATATCCAGGCTTCAAACAGGAATATAACTGGAGAAGCCCTCAGCTCATTGTCCTTTAAGGATCTAAAGAACCTGGAGGGACGATTGGAGAAAGGAATCAGTAGAATCAGAGCCAAAAAAAATGAAACGTTGTTAGCTGAAATAGAGTACATGCAAAAGAGGGAGATTGAGCTACAGAATCACAACAACTATCTGAGAGCAAAGATATCTGAGAATGAACAAGCACATCATCAAGACCAAGCCAACATTATCCCTGGAGCTGTATACCAAAACTTGCCTGTTCAACCGTTTGATCGAAACTACCTTCTTGATTCTAATAATCAGTATCCTCGCCAAGATCAGACGTGTCTCCAACTTGTTTAA 699 43.2 MEGSASSQKKMGRGKIEIKRIENMTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKACSDSSNTATVAETNTQFYQHEATKLRRQIRDIQASNRNITGEALSSLSFKDLKNLEGRLEKGISRIRAKKNETLLAEIEYMQKREIELQNHNNYLRAKISENEQAHHQDQANIIPGAVYQNLPVQPFDRNYLLDSNNQYPRQDQTCLQLV 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29282056 29285290 - Bma007886.1 Bma12g00686 92112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00686 232 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 8 199 - -
Bma12g00686 232 SUPERFAMILY SRF-like 12 86 IPR036879 GO:0003677|GO:0046983
Bma12g00686 232 Coils Coil 134 154 - -
Bma12g00686 232 ProSitePatterns MADS-box domain signature. 13 67 IPR002100 GO:0003677|GO:0046983
Bma12g00686 232 Pfam K-box region 94 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma12g00686 232 Gene3D - 24 106 IPR036879 GO:0003677|GO:0046983
Bma12g00686 232 ProSiteProfiles K-box domain profile. 97 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma12g00686 232 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Bma12g00686 232 CDD MADS_MEF2_like 12 88 IPR033896 GO:0000977|GO:0045944
Bma12g00686 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 199 - -
Bma12g00686 232 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Bma12g00686 232 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Bma12g00686 232 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Bma12g00686 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Bma12g00686 232 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02062 Bma-Chr1:76049137 Bma12g00686 Bma-Chr12:29282056 5.77E-97 dispersed
Bma02g00105 Bma-Chr2:951013 Bma12g00686 Bma-Chr12:29282056 3.71E-46 dispersed
Bma11g00967 Bma-Chr11:43266137 Bma12g00686 Bma-Chr12:29282056 2.26E-94 dispersed
Bma11g00969 Bma-Chr11:43356901 Bma12g00686 Bma-Chr12:29282056 5.03E-95 dispersed
Bma12g00686 Bma-Chr12:29282056 Bma05g01120 Bma-Chr5:49986424 8.04E-52 dispersed
Bma13g00666 Bma-Chr13:16786526 Bma12g00686 Bma-Chr12:29282056 1.71E-18 dispersed
Bma12g00686 Bma-Chr12:29282056 Bma01g01093 Bma-Chr1:11526000 1.18E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58127 PF01486 K-box 5.30E-27 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00686 K09264 - rcu:107261344 340.502