Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00749 ATGGGGTGGAGGAAATCTGCTACTGTGCACAAGAATTTGAAGATCTATGCGCAGGTTTTGAGCTTCGCGTTGATCTGGGTGGCGCAGTTTTCTTGTGGATTAACTAATCCCAATGACTTTGCTGCAATTAGTGATTTACATGCCGCACTTGGCTACCCTATTCTTCCTGGTTGGGGCACTGGACAAGATCCCTGTGGTGATGCCTGGCAGGGTGTCGTGTGCAACATTTCTGATATAGTAAAAATAGATCTGAGTAATAATCGCATTGGAGGGAGCATACCATCCAACTTACCCGTAACGATGCAAAACTTTTTTCTTTCAGCTAATCGGTTTACTGGAAGCATTCCAAGTTCATTATCCACTTTGACTCAATTGGCTGCTTTATCGTTGAATGAAAATTACCTGAGCGGAGAAATTCCCGATTCATTCGAAACCCTTTCTGGACTGGTTAACCTAGACTTATCCAATAACAATTTGAGTGGGCCTCTACCTCTCTCTATGGAAAACTTGTTGGTGCTGACTACACTGCGATTGCAGAACAATCAGCTTTCTGGTACCCTTGATGTTTTACAAGATCTTCCACTCAAAGACTTGAATATAGAGAATAATCTGTTTTCTGGTCCAATACCTGCGGAGCTTATGAGCATACCGACTTTCAGCAGATATGATGGAAATCCATTCAATTCTTCAGTTTCTCCAGTACTTTCGCCTTCACCCCCATCAAAACATTCACCGATACCATTCTTTCCTAGAGAACCATCTCCGGAAAAGGCACCGCCGGAACTGGCTGACAGACCATCTTCATCAAATGAATCAAAATCAGGGAATAAAAAAAGGATAGTTTGGATATCAATTGCTGCGGTGTCATCGTTTATAATCTTGGCATTAGTGCTTATATTATTTTTGCCGAGGTGTCTCAGAGGAAGTAGAGAGGATGACAGAAATTTTAAACAGCATCAAATTGGTGCATACAAAGGTGACAGAGAAAGCCCAAGGAATGATGCAATTCCAAAAGATGCTGTTGCAAAGCCAAAGGAGAGTCGTCAAGCAGAGACTCAAAGAATAGAAGCGATACCAGAACCAACAGCACTAAAGAAGGATTATCATGAGATAGATATTAGTGCTCTGGATGACTATTTAATTCCTCCACCTCCACCTCCTCCACCTCCACCTCTACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCCACTCCCCCTCCCCCTCCCCCTCCACCACCATTTGCAGCGAAGATCAATAAGGAGACAATTATTCCAACCAAAGTGACTCCCATGAAGCCTTCATCCACAAAATTAAACACCCCCACTTTCGCTAAGTCTTTCAATATTGCGTCCCTTCAGCAATTTACTAACAGTTTTTCTCAGGAAAATCTAATAGGAGGAGGAATGCTGGGGAACGTTTATAAGGCTATCACACCTAATGGAAAGCTGCTTGCGGTGAAAAAATTGGATAAAAGGACTTGCAGTCAACAAAAGGATGATGACTTTCTTGAAATGGTTAATAATATTGATACAATACGCCATTATAATATTGTGGAGCTCATGGGTTACTGTGCGGAACATGATCAAAGGCTGCTTATCTATGAGTACTGTAATAATAGTACTCTCCAAGATGCACTACACTCCGACGATGAAACCAAAAATAAACTTTCTTGGAATATCCGCTTGCAAATGGCTCTTGGAGCTGCTAGAGCCTTAGAGTATCTGCAGGAGGTCTGTCAGCCTCCTGTCATGCATAGAAATTTCAAGTCTGCCAATATTCTTCTCGATGATGATTATTCTGTCCGTGTCTCCGATTGTGGTTTATCTCCTCTTATATCATCTGGTTCTGTTAGTCAGTTGTCTGGTCATCTTGAATCTGTGTATGGATGGGTAGCTCCAGAGTATGAATCAGGAAGTTACACTTTGAAGAGTGATGTTTACAGTTTTGGTGTGGTTATGCTAGAACTTTTGACAGGCCGGATGCCGTATGACAGTACGAGGAATAGAGGAGAACAATTTCTGGTGAGATGGGCGATTCCACAACTTCATGACATTGATGCATTGTCAAGAATGGTCGATCCATCTCTCGGTCTCGAATACCCAGCCAAATCCTTATCACACTTTGCGGACATTATATCCCGATGTGTTCAGTCTGAGCCTGAATTCAGGCCAGCAATGTCTGAAGTTGTTCAGGATTTGTTGGACATGATAAGAAGAGAGCCTCATGGGAGTGGATCAGCAGAAGATTAA 2259 42.9 MGWRKSATVHKNLKIYAQVLSFALIWVAQFSCGLTNPNDFAAISDLHAALGYPILPGWGTGQDPCGDAWQGVVCNISDIVKIDLSNNRIGGSIPSNLPVTMQNFFLSANRFTGSIPSSLSTLTQLAALSLNENYLSGEIPDSFETLSGLVNLDLSNNNLSGPLPLSMENLLVLTTLRLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPAELMSIPTFSRYDGNPFNSSVSPVLSPSPPSKHSPIPFFPREPSPEKAPPELADRPSSSNESKSGNKKRIVWISIAAVSSFIILALVLILFLPRCLRGSREDDRNFKQHQIGAYKGDRESPRNDAIPKDAVAKPKESRQAETQRIEAIPEPTALKKDYHEIDISALDDYLIPPPPPPPPPPLPPPPPPPPPPPPPPTPPPPPPPPPFAAKINKETIIPTKVTPMKPSSTKLNTPTFAKSFNIASLQQFTNSFSQENLIGGGMLGNVYKAITPNGKLLAVKKLDKRTCSQQKDDDFLEMVNNIDTIRHYNIVELMGYCAEHDQRLLIYEYCNNSTLQDALHSDDETKNKLSWNIRLQMALGAARALEYLQEVCQPPVMHRNFKSANILLDDDYSVRVSDCGLSPLISSGSVSQLSGHLESVYGWVAPEYESGSYTLKSDVYSFGVVMLELLTGRMPYDSTRNRGEQFLVRWAIPQLHDIDALSRMVDPSLGLEYPAKSLSHFADIISRCVQSEPEFRPAMSEVVQDLLDMIRREPHGSGSAED 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34452225 34457587 + Bma007990.1 Bma12g00749 92175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00749 752 MobiDBLite consensus disorder prediction 360 374 - -
Bma12g00749 752 MobiDBLite consensus disorder prediction 238 256 - -
Bma12g00749 752 Gene3D Ribonuclease Inhibitor 34 243 IPR032675 -
Bma12g00749 752 MobiDBLite consensus disorder prediction 320 353 - -
Bma12g00749 752 Pfam Protein tyrosine and serine/threonine kinase 465 736 IPR001245 GO:0004672|GO:0006468
Bma12g00749 752 Gene3D Transferase(Phosphotransferase) domain 1 541 744 - -
Bma12g00749 752 Gene3D Phosphorylase Kinase; domain 1 426 539 - -
Bma12g00749 752 Pfam Leucine rich repeat 102 159 IPR001611 GO:0005515
Bma12g00749 752 SUPERFAMILY Protein kinase-like (PK-like) 436 736 IPR011009 -
Bma12g00749 752 MobiDBLite consensus disorder prediction 320 419 - -
Bma12g00749 752 ProSiteProfiles Protein kinase domain profile. 462 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00749 752 MobiDBLite consensus disorder prediction 379 419 - -
Bma12g00749 752 SUPERFAMILY L domain-like 53 215 - -
Bma12g00749 752 PANTHER LEUCINE RICH REPEAT KINASE 2 77 743 - -
Bma12g00749 752 PANTHER LEUCINE RICH REPEAT KINASE 2 19 82 - -
Bma12g00749 752 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 77 743 - -
Bma12g00749 752 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 19 82 - -
Bma12g00749 752 MobiDBLite consensus disorder prediction 230 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00749 - - - csv:101213734 872.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g01363 Bma12g00749 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00749 Bma-Chr12:34452225 Bma13g01189 Bma-Chr13:45177803 5.62E-37 dispersed
Bma08g00889 Bma-Chr8:47538504 Bma12g00749 Bma-Chr12:34452225 1.25E-35 transposed
Bma12g00749 Bma-Chr12:34452225 Bma02g01363 Bma-Chr2:56003294 4.43E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00749 BCT 24 750 Strubbelig Receptor Gene Family AT4G03390 58.0 4.9e-191 664.8
Bma02g01363 BCT 24 629 Strubbelig Receptor Gene Family AT4G03390 53.9 3.6e-162 568.9
Bma09g01001 CCT 285 578 Strubbelig Receptor Gene Family AT4G03390 55.2 3.9e-87 319.7
Bma13g01172 . 154 444 Strubbelig Receptor Gene Family AT4G03390 54.7 8.6e-87 318.5
Bma13g01172 . 1 459 Strubbelig Receptor Gene Family AT1G78980 61.0 5.6e-154 541.6
Bma10g00660 . 26 688 Strubbelig Receptor Gene Family AT1G78980 51.4 2.4e-128 456.4
Bma09g01001 CCT 288 593 Strubbelig Receptor Gene Family AT1G78980 61.2 3.2e-101 366.3
Bma13g01172 . 1 442 Strubbelig Receptor Gene Family AT3G13065 51.8 1.1e-117 421.0
Bma09g01001 CCT 285 576 Strubbelig Receptor Gene Family AT3G13065 60.1 3.6e-97 352.8
Bma13g01189 CCT 387 682 Strubbelig Receptor Gene Family AT1G11130 51.5 1.8e-83 307.4
Bma09g01001 CCT 288 576 Strubbelig Receptor Gene Family AT1G11130 53.8 5.1e-83 305.8
Bma10g00660 . 397 679 Strubbelig Receptor Gene Family AT1G11130 51.9 2.4e-80 297.0
Bma12g00749 BCT 24 750 Strubbelig Receptor Gene Family AT4G03390 58.0 4.9e-191 664.8
Bma02g01363 BCT 24 629 Strubbelig Receptor Gene Family AT4G03390 53.9 3.6e-162 568.9
Bma09g01001 CCT 285 578 Strubbelig Receptor Gene Family AT4G03390 55.2 3.9e-87 319.7
Bma13g01172 . 154 444 Strubbelig Receptor Gene Family AT4G03390 54.7 8.6e-87 318.5
Bma13g01172 . 1 442 Strubbelig Receptor Gene Family AT3G13065 51.8 1.1e-117 421.0
Bma09g01001 CCT 285 576 Strubbelig Receptor Gene Family AT3G13065 60.1 3.6e-97 352.8
Bma13g01172 . 1 459 Strubbelig Receptor Gene Family AT1G78980 61.0 5.6e-154 541.6
Bma10g00660 . 26 688 Strubbelig Receptor Gene Family AT1G78980 51.4 2.4e-128 456.4
Bma09g01001 CCT 288 593 Strubbelig Receptor Gene Family AT1G78980 61.2 3.2e-101 366.3
Bma13g01189 CCT 1 696 Strubbelig Receptor Gene Family AT1G53730 60.5 3.7e-201 698.4
Bma10g00660 . 15 693 Strubbelig Receptor Gene Family AT1G53730 63.4 5.2e-195 677.9
Bma09g01001 CCT 1 587 Strubbelig Receptor Gene Family AT1G53730 59.0 8.1e-164 574.3
Bma13g01172 . 3 450 Strubbelig Receptor Gene Family AT1G53730 50.5 1.1e-117 421.0
Bma13g01189 CCT 13 702 Strubbelig Receptor Gene Family AT3G14350 60.4 2.5e-191 665.6
Bma10g00660 . 15 699 Strubbelig Receptor Gene Family AT3G14350 53.1 3.5e-164 575.5
Bma09g01001 CCT 1 590 Strubbelig Receptor Gene Family AT3G14350 63.2 1.0e-163 573.9
Bma13g01172 . 101 461 Strubbelig Receptor Gene Family AT3G14350 52.0 5.5e-93 339.0
Bma13g01189 CCT 394 701 Strubbelig Receptor Gene Family AT4G22130 64.4 1.3e-113 407.1
Bma10g00660 . 376 698 Strubbelig Receptor Gene Family AT4G22130 62.1 5.1e-113 405.2
Bma13g01172 . 155 457 Strubbelig Receptor Gene Family AT4G22130 58.7 1.2e-103 374.0
Bma12g00749 BCT 437 742 Strubbelig Receptor Gene Family AT4G22130 58.3 1.4e-99 360.5
Bma02g01363 BCT 369 625 Strubbelig Receptor Gene Family AT4G22130 59.3 2.2e-84 310.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66819 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00749 Bma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0