Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00781 ATGTCTATTCCAGTTCCAGGGACGTTGATTCTCTCTGCGATCTTTCTGCTGGTGTCAATGGCGAGCTCCTCGAAGTTTGATGAGCTTTTCCAGCCCAGCTGGGCTTCAGACCATTTCGTCTATGAAGGAGAACTTCTGAAGCTCAAACTGGACAATTTTTCTGGAGCTGGGTTTTCGTCGAAAAGCAAATACATGTTTGGGAAAGTGACTGTACAAATGAAGCTCGTCGAGGGTGACTCTGCTGGAACTGTTACAGCTTTTTATATGTCATCGGACGGTCCAAACCATAACGAGTTTGATTTTGAATTCTTGGGGAACACTACCGGAGAGCCATACACTGTTCAGACGAATGTATATGTCAATGGAGTTGGAAATAGAGAGCAAAGATTGAATCTTTGGTTTGACCCCACCAAGGATTTCCATTCCTACTCCATTTTCTGGAACAAGCAACAACTTGTATTTCTTGTTGACGAGACACCAATTAGAGTGCTCGCCAACATGGAGGACAAAGGGATGGCGTTTCCAAAGGATCAAGCGATGGGCGTATACAGCTCGATATGGAACGCCGACGATTGGGCGACGCAGGGCGGGAGGGTGAAGACCGACTGGTCGCATGCGCCATTTGTAGCGACCTACAAGGGCTTTCAAATCAACGGGTGCGACCCGGGGGAGCTGGCTAAGGCGGAGAACGCAAAGAAGTGCAGCAGCGCGGCCGGAGAGAAGAGGTACTGGTGGGAGGAGCCGGCGTTGTCGGAACTGAACGTGCATCAAAGCCATCAGCTCTTGTGGGTTAGGGCTAACCACATGGTGTATGATTATTGTACGGACACTGCTAGATTTCCGGTGACTCCTTTGGAGTGTATGCACCATGTTCATCATCATTAG 885 49.04 MSIPVPGTLILSAIFLLVSMASSSKFDELFQPSWASDHFVYEGELLKLKLDNFSGAGFSSKSKYMFGKVTVQMKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYTVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNKQQLVFLVDETPIRVLANMEDKGMAFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKGFQINGCDPGELAKAENAKKCSSAAGEKRYWWEEPALSELNVHQSHQLLWVRANHMVYDYCTDTARFPVTPLECMHHVHHH 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35892595 35894057 - Bma008040.1 Bma12g00781 92207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00781 294 CDD GH16_XET 21 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bma12g00781 294 PRINTS Glycosyl hydrolase family 16 signature 132 149 IPR008264 GO:0004553|GO:0005975
Bma12g00781 294 PRINTS Glycosyl hydrolase family 16 signature 56 74 IPR008264 GO:0004553|GO:0005975
Bma12g00781 294 PRINTS Glycosyl hydrolase family 16 signature 114 127 IPR008264 GO:0004553|GO:0005975
Bma12g00781 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19 291 - -
Bma12g00781 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 241 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Bma12g00781 294 Gene3D - 12 292 - -
Bma12g00781 294 Pfam Glycosyl hydrolases family 16 29 204 IPR000757 GO:0004553|GO:0005975
Bma12g00781 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 19 291 IPR044791 GO:0004553
Bma12g00781 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 290 IPR013320 -
Bma12g00781 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 212 IPR000757 GO:0004553|GO:0005975
Bma12g00781 294 PIRSF EndGlu_transf 3 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01353 Bma12g00781 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00303 Bma-Chr1:2505265 Bma12g00781 Bma-Chr12:35892595 4.08E-123 dispersed
Bma01g01412 Bma-Chr1:22541156 Bma12g00781 Bma-Chr12:35892595 1.64E-96 transposed
Bma03g01330 Bma-Chr3:27152968 Bma12g00781 Bma-Chr12:35892595 1.01E-96 transposed
Bma06g00324 Bma-Chr6:6150699 Bma12g00781 Bma-Chr12:35892595 5.00E-103 transposed
Bma06g00918 Bma-Chr6:44418094 Bma12g00781 Bma-Chr12:35892595 5.71E-93 transposed
Bma09g00199 Bma-Chr9:8066028 Bma12g00781 Bma-Chr12:35892595 9.51E-19 transposed
Bma09g00551 Bma-Chr9:42477269 Bma12g00781 Bma-Chr12:35892595 1.65E-86 transposed
Bma11g00675 Bma-Chr11:13712620 Bma12g00781 Bma-Chr12:35892595 1.30E-94 transposed
Bma12g00307 Bma-Chr12:4339555 Bma12g00781 Bma-Chr12:35892595 4.71E-86 transposed
Bma12g00781 Bma-Chr12:35892595 Bma02g01341 Bma-Chr2:55885903 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00781 K08235 - pop:7498139 509.605