Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00798 AGTTTCTTCAAGGAGTGTCCTCACCCAGATGACAAACAGAGAAAAGAACTCAGTAGAGAATTAGGTTTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAACCAGCATGAGCGCCATGAGAACTCGCAGCTTCGAGCAGAGAACGAAAAGCTTAGAGCAGATAACATGAGGTACAGAGAGGCTCTTAGTAATGCATCATGTCCCAACTGTGGAGGCCCTACGGCTATTGGAGAGATGTCTTTTGACGAACACCATTTGAGACTTGAAAATGCTCGTCTTCGAGAAGAGGTTGATCGCATTTCAGCTATTGCTGCAAAATACGTTGGAAAGCCAATTTTGAACTACCCTCTTTTGTCTTCTCCAGTTCCATCTCGTCAACTCGACCTTGGCATGGGAAACTTCGGCGGCCCACCGGGTATTGGAAGTGAATTGTTTGGAAGTGCCAGCGATCTTCTACGATCAATCAGTGCTCCGACAGAGGCTGATAAACCAATGATAATTGAGCTTGCTGTTGCAGCAATGGAAGAGCTGATGAGAATGGCTCAGATGGGAGAGCCCTTGTGGATGACAACTCTTGATGGGGCAAATTCTATACTCAGTGAAGATGAATACATCAGAACATTTCCAAGAGGGATTGGGCCTAGACCCTCTGGATTTAAGTATGAAGCTTCTCGTGAAACTGCTGTTGTCATTATGAACCACATTAACCTTGTTGAGATACTCATGGATGTGAATCAATGGTCTACTGTATTTTCTGGAATTATCTCAAGAGCAATGACCCTGGAAGTGCTTTCAACTGGAGTTGCAGGAAATTATAATGGAGCTTTACAAGTGATGACATCGGAGTTTCAAGTCCCTTCTCCACTGGTTCCAACCAGAGAGAGTTATTTTGTAAGGTACTGTAAGCAGCACAGCGACGGAACATGGGCGGTGGTCGATGTTTCGTTGGATAATTTACGCCCAAGTCCGGCATTGAGATGTCGGCGGAGGCCGTCCGGCTGTTTGATCCAAGAAATGCCCAATGGATATTCTAAGGTCACTTGGGTAGAGCATGTGGAAGTGGATGATAGGGGTGTTCATAGTCTGTACAAGCAGCTGGTGTGCTCCGGCCATGCTTTTGGAGCAAAACGATGGATCGCCACCTTAGATCGTCAATGCGAACGCCTTGCAAGTGCTATGGCCACTGGAATTCCCACCGGAGATGTTGGTGTAGTGATAACAAATCAAGAAGGGAGGAAGAGTATGTTGAAGTTAGCAGAGAGAATGGTCATAAGCTTCTGTGCTGGAGTGAGTGCTTCAACAACACATACATGGACTACACTATCAGGAACTGGAGCAGATGATGTGAGGGTGATGACCCGTAAAAGCATTGACGATCCCGGCAGACCTCCCGGCATCGTTCTAAGTGCCGCCACCTCATTTTGGCTTCCGGTTTCTCCCAAGAGAGTTTTCGATTTCCTTCGCGACGAAAATTCTCGAAGCGAGTGGGACATTCTTTCTAACGGTGGAGTCGTTCAAGAAATGGCGCACATTGCCAACGGCCGCGACACTGGCAACTCCGTATCTTTGCTTCGGGTAAATAGTGCGAATTCGAGCCAGAGCAACATGCTGATTCTGCAAGAGAGTTGCACCGATCCGACCGGCTCTTTCGTGATTTATGCTCCGGTTGACATTGTAGCCATGAATGTTGTGTTGAATGGTGGAGACCCAGACTATGTTGCTCTTCTCCCTTCGGGATTTGCTATTCTTCCTGATGGAACTGCAGCTCACAGTGCCGCCGTTGGAGAAGCTTCTTCGGGTGGTTCTCTTTTGACCGTCGCATTTCAAATCTTGGTCGATTCCGTTCCGACTGCAAAACTATCTCTCGGGTCAGTCGCCACCGTCAACAATCTCATCGCCTGCACTGTTGAGAGGATCAAAGCTTCGTTGTCATGCGAAAATGCATGA 1968 47.26 SFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEVDRISAIAAKYVGKPILNYPLLSSPVPSRQLDLGMGNFGGPPGIGSELFGSASDLLRSISAPTEADKPMIIELAVAAMEELMRMAQMGEPLWMTTLDGANSILSEDEYIRTFPRGIGPRPSGFKYEASRETAVVIMNHINLVEILMDVNQWSTVFSGIISRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYKQLVCSGHAFGAKRWIATLDRQCERLASAMATGIPTGDVGVVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVSPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESCTDPTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTAAHSAAVGEASSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37356095 37359423 + Bma008078.1 Bma12g00798 92224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00798 655 SUPERFAMILY Bet v1-like 415 647 - -
Bma12g00798 655 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 2 652 - -
Bma12g00798 655 Gene3D - 224 390 IPR023393 -
Bma12g00798 655 Coils Coil 36 68 - -
Bma12g00798 655 ProSiteProfiles START domain profile. 166 398 IPR002913 GO:0008289
Bma12g00798 655 Pfam START domain 176 395 IPR002913 GO:0008289
Bma12g00798 655 SMART HOX_1 1 46 IPR001356 GO:0003677
Bma12g00798 655 CDD homeodomain 1 43 IPR001356 GO:0003677
Bma12g00798 655 ProSiteProfiles 'Homeobox' domain profile. 1 42 IPR001356 GO:0003677
Bma12g00798 655 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Bma12g00798 655 Gene3D - 1 59 - -
Bma12g00798 655 ProSitePatterns 'Homeobox' domain signature. 17 40 IPR017970 GO:0000981|GO:0006355
Bma12g00798 655 SUPERFAMILY Bet v1-like 166 397 - -
Bma12g00798 655 Pfam Homeodomain 2 41 IPR001356 GO:0003677
Bma12g00798 655 SMART START_1 175 395 IPR002913 GO:0008289
Bma12g00798 655 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 652 IPR042160 -
Bma12g00798 655 CDD START_ArGLABRA2_like 170 394 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01326 Bma12g00798 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00972 Bma-Chr5:48169367 Bma12g00798 Bma-Chr12:37356095 0 dispersed
Bma06g01236 Bma-Chr6:49558018 Bma12g00798 Bma-Chr12:37356095 0 dispersed
Bma10g00774 Bma-Chr10:12466019 Bma12g00798 Bma-Chr12:37356095 0 dispersed
Bma12g00798 Bma-Chr12:37356095 Bma12g01265 Bma-Chr12:45678632 0 dispersed
Bma15g00354 Bma-Chr15:3785218 Bma12g00798 Bma-Chr12:37356095 5.53E-13 dispersed
Bma04g01677 Bma-Chr4:52795261 Bma12g00798 Bma-Chr12:37356095 2.99E-159 transposed
Bma07g00005 Bma-Chr7:1084866 Bma12g00798 Bma-Chr12:37356095 1.18E-156 transposed
Bma12g00798 Bma-Chr12:37356095 Bma02g01326 Bma-Chr2:55771471 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58137 PF01852 START 2.00E-59 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00798 K09338 - pvy:116137135 1190.64