Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00800 ATGGATGCCGCCGTCTCGGACATAAATGCCGACCCTACCGTTCTCAACGGGACAAAGCTGAATTTGATTATGGAGGACGTAGACTGCAATGTCTTCCTGGGTTCCATTAGAGCGTTTCAGGTGCTTGAGAAAGAGGTTGTGGCCATTGTAGGGCCTCAGTCTTCTTCCATAGCTCATATGATTTCTCAGATCGCCAATGGTTTGCAAGTGCCTCTTGTCTCATATGCTGCCACTGATCCAACTTTGTCAGCCCTCCAATTTCCCTACTTTGTCCGAACTACACCAAGTGATTCCTATCAAATGGCTGCCATGGCTGACTTGATTGACTTTTATGAGTGGAAAGAGGTCATCGCCATCTTTGAGGACAACAAATATGGAAGAAACGGAATATCTGCTTTAGATAATGAGCTCCAGAAGAAGATGGCTAAAGTTTCGCTTAAATTGCCCATGCATCCCCTATTTAATCACAGCGAGATCGCTCATTTGCTCAATAATTCAAAATTACTTGGTCCTCGTGTGTATGTTGTTCATGTTAGTCCTGATCCCAGATTAAGAATATTTAGAATAGCTGACCAGCTTCAAATGATGACCAACAACTATGTATGGCTTGCTACAGATTGGCTTTCAACGACATTAGATTCACTCTCTCCTACTGATCTATCTTCTCTGGATAGCCTACAAGGCATTGTCGGACTCCGTCAACATTTTCCAGCATCGAATCAGAAGACAGCTTTTTTGTCTCGATTGAGCAAGCAAGAAGGTTCCAGAAGTTCTGCGCATTATGCTTATGCACTTATTGCTTATGATACAATATGGTTAGTTGCTCGCTCGATTGATAAGTTTCTAAAAACGAATGGGAACTTGACATTTTCCTTGACAGATAAGTTACAAAATGTGAATGCATCTAGAATTCACCTGGGCGAACTCAAAGTCTTTAGCGGTGGAGATCGTCTTCTGAGCATACTATTGCAAACAAATTTCACTGGTTTAACTGGTCAAGCTCAATTTAGTTCAGATCGTAATCGTGTTGGTGGCAGTTATGGTGTGATAAACATTAACCGAGGAACTGCTTGGGAAGTTGGTTTTTGGTCTAATGCCTCAGGCTTTACAGTTTTACCACCAGAAACTCTTAATGAGAAACAAATTAGCTATTCTCGTCTAAATCAGGAGCTTGGCAATGTGACTTGGCCTGGTGGAAAGACAAATAGACCACAGGGCTGGGTTATTGCAGATGATGCGAAGCCTCTGAAAATTGGAGTGCCGAAAAGAGCTAGTTTCGTTGAATTTGTCACAGAATCGAACAACACCCACAAGATTCAAGGATACTGCATTGACGTGTTTATAGAGGCACGGAAGTTGGTCCCTTACGACGTTCCATATATATTCGTGCCTTTTGGTGATGGCCATGCCAATCCCAGTTACTCCGACCTTGTGCAGAATGTTGCAAATAATGTGTTCGATGCTGCCGTTGGAGATATAGCAATCGTGACCAACCGAACAAAGATTGTGGATTTTTCGCAGCCTTTTATTGCAACTGGTCTTGTTATTGTGGCCCCCATTGAAAATTCAAAATCTAGCGCTTGGGTTTTCCTCAAACCTTTTACGGTGGAGATGTGGTGCGTCACAGTAGCATCATTTGTCCTGGTTGGAATCGTTATATGGATTCTTGAGCATCGAGTTAATGATGATTTCCGGGGCCCTCCAAAAACGCAGATTGTGACAGTTTTATTGTTCAGCTTCTCAACTCTTTTTAAGACAAATCAGGAAGTTATGGTTAGCCCACTGGCAAGGATGATTATGGTGATCTGGCTTTTCTTATTGATGGTTATCACTTCAAGCTACACGGCAAGTTTGACTTCAATCCTTACAGTTCAGCAGCTTTCGTCTCCTATCACCGGAATCGATAGCTTAATTGCAAGTAATTGGCCTATTGGATACCAGGTAGGGTCCTTTACCTACAGCTATCTGACCGAGAACTTATACATACATGGATCAAGACTTGTTTCTCTAGGCTCTCCGGAAGAGTATGAAAAAGCTCTTCGACTAGGGCCTCGTAATGGAGGAGTGGCTGCCATTATAGACGAGCTTCCATATGTGGAGTTGTTTTTGTCGAAAACTCATGATTTTGGGATTATTGGGCAGACATTTACCAAAAGCGGCTGGGGTTTTGCTTTCAAGAGAGACTCTCCTCTTGCAATTGACATTTCCACTGCAATTTTGAAACTTTCTGAGAACGGAAAGCTTCAAAAAATACGCGAGAAGTGGTTCTGTCAAATGGGTTGCCCCGGCGATAGAATACATACATCCTCACCAAACCAGCTTCCCTTAATGAGCTTCTGGGGTTTATATCTCTTCTGTGGTTTTCTTTGTCTAGCTGCGCTCCTCATATTTCTACTGAGAATGAACGGACGTATCTTCATCAGTAGGGCATTGTTTGTGTTAAGTTTGCACGTATGGCTGCTAATTGGAGTAATGGGTGGGACAGGAAATGGCAGTGCTTTTCCGAGCGTAGTGAATATTGGTGCTTTGTTTACTGTTGACTCGGTGATTGGAAGGTCTGCAAAGCCCGGAATTTTAGCTGCGTTGGACGATGTCAATGCCGATACAACTGTTCTTCCTCACACTAAGTTGAATGTGATTTTACACGATACAAATTGCAGTGGCTTTATAGGAACTGTGGAAGCTTTGCAGCTAATGGAAGATGAAGTAGTTGCTGCAATTGGCCCACAATCCTCTGGAATATCTCATGTCATTTCCCATGTTGTTGACGAACTTCAAGTGCCCCTTCTATCTTTTGCATCAACAGATCCGACCCTTTCAGCTCTACAATTTCCGTATTTTGTTCGGACTACACAGAGTGATTATTTCCAGATGAAGGCAATTGCTGATCTGATAGAGTATTATGGATGGAGAGAGGTCATTGCTATATTTGTGGATGATGATTACGGAAGAAGCGGAATATCAGTTTTAGGCGATGCACTCGCTAAAAAGCGATCAAAAATTTCTTTCAAGGCTGCTATCGCTCCTGGGGCCTCTCGAATTGATGTCAACGACTTGTTGGTTGGGGTAAATCTCATGGAATCTCGTGTATATGTCGTGCATGTCAATCCCGACTCTGGTTTGTCGATATTTTCTGCTGCGAATAGTCTTGGAATGATGAGTGGTGGCTATGTGTGGATTGCCACAGATTGGCTTCCTTCTCTTCTTGATTCGTTAGAAACGGCTAACCCAGATGTTATGAATCTCATACAAGGAGTTGTTGCTCTTCGTCACCACATCCCTGACGATGATCTAAGAACGAAAACTGCTTCAAAATGGAAGAATCGAAATTACAATTCGACCCAAAATTTGAATACTTACGCGTTTTATGCATATGACTCCGTCTGGTTAGCAGCCCGTGCTCTTGACGCTTTCTTCAAAGAAGGTGGGAATATATCTTTCTCTGGTGACTCAAGTTTGGACGATACACGTGGCAGTGTGCTTCATCTATCATCGCTCCGAATTTTCGACGGGGGAAAACAGCTTCTACAGACAATTTTGAGAACAAACTTCACTGGTCTGAGCGGTCAGATTCAATTTGATCAAGATAAAAACTTAGTTGATCCAGCATACGATATTCTCAACATCGGTGGAACTGGTTTACGTAGAGTTGGTTTTTGGTCGAATCATTCGAGTTTATCAACCGTTCCTCCTGAGACTTTATATTCAACGCCACTCAACAGTTCTTCTAGTAGTTTAGGTCTTTACAGCATAATATGGCCGGGTGAAACGATAAAAACTCCTCGTGGATGGGTATTTCCGAACAACGGAAAGCCCCTTCGGATTGCAGTGCCGTATAGAGTGAGCTACAAAGAATTTGTGTCGAAAGACTCGAGTCCTCCTGGCGTTAAAGGGTTCTGTATTGACGTGTTTGAGGCTGCCGTAAACTTGCTGCCTTATCCAGTTCCACGCGAGTTTATATTATACGGAGACGGAAAGGAAAATCCTTCGTACAATAATATTGTTTATGATGTTTATCAAAATAAATTCGATGCTGCCGTTGGTGATGTTACGATCGTCACGAATCGGACGAAGCTCGTGGACTTCACTCAGCCTTTCATGACTTCAGGGCTCGTTGTCGTGGCCACGGTCAGACAGGCAAAGTCTAGTGCTTGGGCTTTCCTCCGCCCATTCACGATTCAAATGTGGCTTGTCACTGGTTCATTCTTCCTTTTTGTAGGAGCCGTTGTTTGGATACTTGAGCATCGTGTTAATCCGGAGTTTCGTGGGCCACCCAGACAACAACTCATTACAATGTTTTGGTTCAGTTTTTCGACAATGTTCTTTTCCCACAGAGAAAACACAATGAGCACTTCTGGCCGGTTTGTACTACTAATATGGCTATTTGTGGTGTTAATTATTAATTCAAGTTACACGGCTAGCTTGACGTCGATTCTTACGGTGCAACAGCTGACATCGAAGATTGGAGGGATGGATACCTTAATCTCGAGCACCGATCCAATAGGAATTCAAGTAGGATCATTTGCTTATAATTATCTGACTGAGGAATTGAATATAGCACAGTCTAGGATCATTCAGTTGAAAGGGCTGGAAGAATATACTACCGCTCTTCAGAAAGGGCCCGGAGGCGGTGGAGTAGCGGCCATTGTTGACGAGCTTCCGTACATCGAGAGGTTTTTGACAAGCACCAATTGTGCATTCAGGACTGTTGGACAAGAGTTCACAAAAAGTGGATGGGGATTTGCGTTTCAGAGGGACTCTCCTCTCGCCATTGATTTATCGACGGCAATTCTTCAACTGTCGGAGAATGGCGATCTTCAAAAGATTCACGATAAATGGCTCTCGACGACTCAATGCTCTATGCAGCTCAACCAAGTCGATGCGAATCAGTTATCTCTCGATAGCTTTTGGGGACTTTTTCTTATTTGTGGCATTGCATGCTTCCTCGCTCTTCTCGTGTTCTTCTTTCGTGTTATCTGCCAATACCTCAAATTCGTACCCCATCTCGAACCCAAAGCTGATATCGAGGAGAACGAAGCTGCTCGAACAATAAAGTCGACTGGTTCAAATAGCTTCAAACGATTGATCAATTTTGTAGATAAGAAAGAAGTAGAGATTAAGCATATGCTAAAGCAAAAGACAATAGACAAAAAACAAGCTAGCCAGAGCTCTATTGCGCATTCGATTTCACTGTCTTGA 5199 43.07 MDAAVSDINADPTVLNGTKLNLIMEDVDCNVFLGSIRAFQVLEKEVVAIVGPQSSSIAHMISQIANGLQVPLVSYAATDPTLSALQFPYFVRTTPSDSYQMAAMADLIDFYEWKEVIAIFEDNKYGRNGISALDNELQKKMAKVSLKLPMHPLFNHSEIAHLLNNSKLLGPRVYVVHVSPDPRLRIFRIADQLQMMTNNYVWLATDWLSTTLDSLSPTDLSSLDSLQGIVGLRQHFPASNQKTAFLSRLSKQEGSRSSAHYAYALIAYDTIWLVARSIDKFLKTNGNLTFSLTDKLQNVNASRIHLGELKVFSGGDRLLSILLQTNFTGLTGQAQFSSDRNRVGGSYGVININRGTAWEVGFWSNASGFTVLPPETLNEKQISYSRLNQELGNVTWPGGKTNRPQGWVIADDAKPLKIGVPKRASFVEFVTESNNTHKIQGYCIDVFIEARKLVPYDVPYIFVPFGDGHANPSYSDLVQNVANNVFDAAVGDIAIVTNRTKIVDFSQPFIATGLVIVAPIENSKSSAWVFLKPFTVEMWCVTVASFVLVGIVIWILEHRVNDDFRGPPKTQIVTVLLFSFSTLFKTNQEVMVSPLARMIMVIWLFLLMVITSSYTASLTSILTVQQLSSPITGIDSLIASNWPIGYQVGSFTYSYLTENLYIHGSRLVSLGSPEEYEKALRLGPRNGGVAAIIDELPYVELFLSKTHDFGIIGQTFTKSGWGFAFKRDSPLAIDISTAILKLSENGKLQKIREKWFCQMGCPGDRIHTSSPNQLPLMSFWGLYLFCGFLCLAALLIFLLRMNGRIFISRALFVLSLHVWLLIGVMGGTGNGSAFPSVVNIGALFTVDSVIGRSAKPGILAALDDVNADTTVLPHTKLNVILHDTNCSGFIGTVEALQLMEDEVVAAIGPQSSGISHVISHVVDELQVPLLSFASTDPTLSALQFPYFVRTTQSDYFQMKAIADLIEYYGWREVIAIFVDDDYGRSGISVLGDALAKKRSKISFKAAIAPGASRIDVNDLLVGVNLMESRVYVVHVNPDSGLSIFSAANSLGMMSGGYVWIATDWLPSLLDSLETANPDVMNLIQGVVALRHHIPDDDLRTKTASKWKNRNYNSTQNLNTYAFYAYDSVWLAARALDAFFKEGGNISFSGDSSLDDTRGSVLHLSSLRIFDGGKQLLQTILRTNFTGLSGQIQFDQDKNLVDPAYDILNIGGTGLRRVGFWSNHSSLSTVPPETLYSTPLNSSSSSLGLYSIIWPGETIKTPRGWVFPNNGKPLRIAVPYRVSYKEFVSKDSSPPGVKGFCIDVFEAAVNLLPYPVPREFILYGDGKENPSYNNIVYDVYQNKFDAAVGDVTIVTNRTKLVDFTQPFMTSGLVVVATVRQAKSSAWAFLRPFTIQMWLVTGSFFLFVGAVVWILEHRVNPEFRGPPRQQLITMFWFSFSTMFFSHRENTMSTSGRFVLLIWLFVVLIINSSYTASLTSILTVQQLTSKIGGMDTLISSTDPIGIQVGSFAYNYLTEELNIAQSRIIQLKGLEEYTTALQKGPGGGGVAAIVDELPYIERFLTSTNCAFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHDKWLSTTQCSMQLNQVDANQLSLDSFWGLFLICGIACFLALLVFFFRVICQYLKFVPHLEPKADIEENEAARTIKSTGSNSFKRLINFVDKKEVEIKHMLKQKTIDKKQASQSSIAHSISLS 1732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37363190 37379527 - Bma008080.1 Bma12g00800 92226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00800 1732 Gene3D - 704 763 - -
Bma12g00800 1732 Gene3D - 1561 1621 - -
Bma12g00800 1732 PANTHER GLUTAMATE RECEPTOR 3.7 1 801 - -
Bma12g00800 1732 PANTHER GLUTAMATE RECEPTOR 3.7 831 1719 - -
Bma12g00800 1732 SUPERFAMILY Periplasmic binding protein-like I 1 407 IPR028082 -
Bma12g00800 1732 Gene3D - 860 1201 - -
Bma12g00800 1732 Gene3D - 1273 1383 - -
Bma12g00800 1732 Pfam Receptor family ligand binding region 856 1210 IPR001828 -
Bma12g00800 1732 Pfam Receptor family ligand binding region 1 354 IPR001828 -
Bma12g00800 1732 Gene3D - 96 369 - -
Bma12g00800 1732 Pfam Bacterial extracellular solute-binding proteins, family 3 428 756 IPR001638 -
Bma12g00800 1732 Gene3D - 408 526 - -
Bma12g00800 1732 Gene3D - 953 1225 - -
Bma12g00800 1732 SUPERFAMILY Periplasmic binding protein-like II 394 757 - -
Bma12g00800 1732 Pfam Ligand-gated ion channel 757 787 IPR001320 GO:0015276|GO:0016020
Bma12g00800 1732 SMART GluR_14 417 758 IPR001320 GO:0015276|GO:0016020
Bma12g00800 1732 SMART GluR_14 1274 1616 IPR001320 GO:0015276|GO:0016020
Bma12g00800 1732 Pfam Ligand-gated ion channel 1616 1647 IPR001320 GO:0015276|GO:0016020
Bma12g00800 1732 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 801 - -
Bma12g00800 1732 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 831 1719 - -
Bma12g00800 1732 Gene3D - 1384 1519 - -
Bma12g00800 1732 Gene3D - 527 657 - -
Bma12g00800 1732 CDD GluR_Plant 1271 1614 - -
Bma12g00800 1732 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 851 867 - -
Bma12g00800 1732 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 911 939 - -
Bma12g00800 1732 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 1124 1136 - -
Bma12g00800 1732 SUPERFAMILY Periplasmic binding protein-like I 832 1265 IPR028082 -
Bma12g00800 1732 CDD PBP1_GABAb_receptor_plant 839 1230 IPR044440 -
Bma12g00800 1732 Pfam Bacterial extracellular solute-binding proteins, family 3 1286 1615 IPR001638 -
Bma12g00800 1732 CDD GluR_Plant 414 756 - -
Bma12g00800 1732 SUPERFAMILY Periplasmic binding protein-like II 1247 1614 - -
Bma12g00800 1732 Gene3D - 2 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02415 Bma-Chr1:81763424 Bma12g00800 Bma-Chr12:37363190 0 dispersed
Bma08g00714 Bma-Chr8:42929176 Bma12g00800 Bma-Chr12:37363190 0 dispersed
Bma09g00235 Bma-Chr9:10098898 Bma12g00800 Bma-Chr12:37363190 0 dispersed
Bma10g00751 Bma-Chr10:11972624 Bma12g00800 Bma-Chr12:37363190 7.17E-126 dispersed
Bma12g00800 Bma-Chr12:37363190 Bma14g00262 Bma-Chr14:3083093 2.39E-37 dispersed
Bma12g00800 Bma-Chr12:37363190 Bma02g00328 Bma-Chr2:4485146 8.71E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00800 K05387 - qsu:112026600 1347.41