Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00808 ATGGGGCAGAGCACAGGTAAGGGAGGAAAGAACAGGAAGAGGGGAAAGAACGAAGCGGACGATAAGAAGCGTGAGCTTGTGTTCAAGGAAGACGGACAAGAATATGCCCAAGTTCCCCGAATGTTGGGTAATGGCAGATGCGAGGCAATGTGTATAGATGGGACAAAACGACTATGCCACATCCGAGGAAAGATGCACAAGAAGGTGTGGATTGCAGCCGGTGATATCATTCTCGTCGGCCTTCGTGATTATCAGGACGATAAAGCTGACGTAATCATCAAATACATGCCTGATGAGGCTAGGCTTTTGAAGGCTTTTGGGGAGCTTCCTGATAACACTCGTCTCAACGAGGGCATTGCTGGTGGGATCGACGACGAGGATGAGGCTGGAGGCGAAGATTACATCGAGTTTGAAGATGAAGATATCGATAAGATCTAG 438 48.63 MGQSTGKGGKNRKRGKNEADDKKRELVFKEDGQEYAQVPRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVIIKYMPDEARLLKAFGELPDNTRLNEGIAGGIDDEDEAGGEDYIEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37637782 37638219 - Bma008091.1 Bma12g00808 92234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00808 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bma12g00808 145 SUPERFAMILY Nucleic acid-binding proteins 5 144 IPR012340 -
Bma12g00808 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bma12g00808 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Bma12g00808 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Bma12g00808 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Bma12g00808 145 MobiDBLite consensus disorder prediction 1 26 - -
Bma12g00808 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Bma12g00808 145 MobiDBLite consensus disorder prediction 11 26 - -
Bma12g00808 145 Gene3D - 3 145 IPR012340 -
Bma12g00808 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Bma12g00808 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Bma12g00808 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00808 Bma-Chr12:37637782 Bma12g00837 Bma-Chr12:38663945 3.81E-97 dispersed
Bma12g00808 Bma-Chr12:37637782 Bma12g00845 Bma-Chr12:39196213 3.81E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00808 K03236 - fve:101293411 229.18