Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00825 ATGCCAAATATTCTCCCAAATATTTCCCCTCCACCATCTGCTTTCCTCGGACCAAAATGTGCTCTATGGGAGTGTTTCAGACCTGCCCAAGTATCGGAATGGTGCCATGATTACTGTAGTACCTGTCATTCAGTTCTAGCAAAAAATGAAGGTTTTGCTGGTATGAACCCCATCGTGCGACCTGGAGGCATTGGTTTGAAGGATGGTCCTTTATTAGCTGCACTCAATGCAAAGTCACAGGGAAAGGAAGTTGGAATCCCTACATGCGATGGAGCTGCCACTTTGAAATCTCCCTGGAATGCTTCAAATCTATTTGATGTTTCCTTTCTTCATGGCGAGACTTTGAGAGAATGGCTCTTTTTTGACAAACCCAGAAGAGCATTTGAGACTGGAAATCGAAAACAAAGGTCAATACCGGATTATCCAGGACGTGGTTGGCATGAATCGAGAAAGCAGGCGATGAAAGAATATGATGGGCAAAAGAGGTCTTATTACATGGATCCTCAGCCATCGAGTTCTTACGAATGGCATTTGTACGAATACGAGATCAACGACTATAATTCATGTGCATTGTATAGGTTGGAATTCAAGCATTCTAATGCTAAGAAGAGCCAGAAGGGGAAAGTGCCTACTGACTCTCTTGCCGATTTGCAGAAGAAGATGGGACGGCTCACGGCAGAGGGTCCTCCATAG 693 44.59 MPNILPNISPPPSAFLGPKCALWECFRPAQVSEWCHDYCSTCHSVLAKNEGFAGMNPIVRPGGIGLKDGPLLAALNAKSQGKEVGIPTCDGAATLKSPWNASNLFDVSFLHGETLREWLFFDKPRRAFETGNRKQRSIPDYPGRGWHESRKQAMKEYDGQKRSYYMDPQPSSSYEWHLYEYEINDYNSCALYRLEFKHSNAKKSQKGKVPTDSLADLQKKMGRLTAEGPP 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38216961 38217848 - Bma008124.1 Bma12g00825 92251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00825 230 MobiDBLite consensus disorder prediction 131 150 - -
Bma12g00825 230 PANTHER TRANSCRIPTION FACTOR VOZ1 2 229 IPR039277 GO:0006355|GO:0048578
Bma12g00825 230 MobiDBLite consensus disorder prediction 201 230 - -
Bma12g00825 230 PANTHER TRANSCRIPTION FACTOR VOZ2 2 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00825 - - - csv:101211467 382.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00428 Bma-Chr11:4696097 Bma12g00825 Bma-Chr12:38216961 3.68E-119 dispersed
Bma12g00825 Bma-Chr12:38216961 Bma07g00407 Bma-Chr7:4967455 2.06E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g218 . . Bda06g00389 . . . . . . . Cma02g00196 Cma20g00581 . Car20g00557 . . . . . . . . . . . . . . . . . . Cone10ag1260 . . . . Chy11g00658 . . . . . . . . Bma12g00825 . Cmo02g00199 Cmo20g00652 . . . . Cpe16g00412 Cpe05g01419 Bhi10g01369 Tan05g0925 . . Hepe08g0429 . . . . . . . . . . . . Cme11g00861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma07g00407 BCT 3 484 VOZ-9 Transcription Factor Family AT1G28520 71.2 5.8e-206 713.8
Bma11g00428 BCT 2 476 VOZ-9 Transcription Factor Family AT1G28520 70.6 1.1e-196 682.9
Bma12g00825 . 3 230 VOZ-9 Transcription Factor Family AT1G28520 72.4 2.8e-96 349.4
Bma11g00428 BCT 27 435 VOZ-9 Transcription Factor Family AT2G42400 50.9 3.0e-108 389.0
Bma07g00407 BCT 28 423 VOZ-9 Transcription Factor Family AT2G42400 51.8 2.5e-107 386.0
Bma12g00825 . 7 224 VOZ-9 Transcription Factor Family AT2G42400 66.5 5.0e-87 318.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58139 None None None None Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00825 Bma_Chr12 FPKM 0.0 0.0 0.451921 0.0 0.0 0.168195 0.0 0.0 0.0 0.0