Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00829 ATGGAGGATGATTTGGAGGGGGAGAAGATGAAGCAGCCGGAGTTAGAGAACAAGACCAAACGGAAGATGAAGACTGCTTCTCAGTTGGACATTCTGGAGAAAACTTATGCGGTGGAAACCTATCCGTCGGAGTCTGTAAGAGCTGAGTTATCAGTAAAACTTGGGCTTTCCGATCGCCAATTACAGATGTGGTTCTGTCACAGGCGGTTAAAGGACAGGAAGACGCCATCAGCAAAGCGGCTGAAGAAGGATTCTCCGCCCCCAAATGCTGCAACTTCTGTGGGAGGGAATGGGGATGAATTGGAAGTGCGTAATGTTGAGAATGACCATGGTTCAGGCTCTGGTTCCGCTTTGGCTTCAAGTTCATATGGCCATGGAACGGATTTGAGGCGAGGTGTTCAGAGGCCTGGAGTGGCTATTGCCAGAATTAGCAGTGATATGCCTCCAATGAAGCGGTACTATGAAAGTCAGCAGACCATTGCTGAGCTTCGGGCTATAGCTTTTGTAGAAGCGCAGTTAGGAGAGCCGTTGAGGGAAGATGGACCAATTTTAGGAATGGAGTTTGATCAACTGCCTCCTGATGCATTTGGTGCTCCCATAGGTATATACGAAAATAAATATAAATCCAAATCGGATTTGATCCCGGTTGATCATCAGGTTTCAGGGAGGGCATTGCATGAATATCAGTTTCTTCCAGAGCAGCCAACTATCAGAGCTGATACATATGAAAGAGCTACTTCTTCCCATTACAGTTCGCCTGCTAGTGTCCAAAATGCCAGGGTCCCATTAGTCTCTACAGGGTTTTTGCATCGGAACGACCATTCGGCTTCTGGATACCCTTTTCAAGGTCAGATGTCTAACTCAAATATCCTCACTCAGCAAGGCAGTCAGGGGCATTTCTTACCTTCTGCTGTGGCAATTTATGACAATGTTTACCGCAAGAACTCTATTGTAAACTCTGCTATGGATTCTCAATATGGTGCACACCCCATAACTCAATTAGAGAATCCATTTGTAGCATCTGAAAGAAGGGCCACTCGTGACGAGGATGTTTTAAGGATAGAAAGGAAACGAAAGAGTGAAGGAGCTAGAATGGCACGTGAAGTTGAAGCGCATGAGAAAAGGATTCGGAAGGAGCTTGAAAAACAAGATATCATGAGGAGAAAGAGAGAGGAACAAGAAAGAAAAGAAATGGAAAGGCATGACCGTGAGAGGCGTAAAGAAGAAGAAAGGTTGTTGCGTGAAAAGCAGAAAGAGGAAGAGAGACTCATACGAGAGCAAAGACGCGAAATGGAGAGAAGAGAGAAGTTCATACAGAAGGAGTCCATTAGAGCTGAGAAAATGAAACAAAAAGAAGAGATGCGCAGAGAAAAGAAGGCAGCCAGACTTAAAGTAGCTCATGAAAGAGCTATTGCTAGAAGAATTGCAAGAGAATCAGTGGAACTTATTGACGATGAACGCTTGGAGATAATGGAATTGGCTGCCTCTAACAAGGGGTTGCCTAGCGGACAATCACTTGACTATGAAGCTTTGCAAAATATTGAGTTATATAGAGATATGCTGATTACTTTCCCCCCAAAATCTCTGGAAATGAAAAAGCCTTTCTCAAATCAACCTTGGATTGATTCTGAGGATAACGTGGGCAATTTACTCATGGTCTGGAGGTTCTTAATTACCTTTGCAGATGTTCTCGGCCTTTGGCCGTTTACTCTTGATGAATTTGTTCAGGCTTTTCATGATTATGATCCGAGGTTGTTGGGTGAGGTACACGTTGCTCTTCTCAGATCCATCATCAAAGACATTGAAGATGTTGCCAGAACACCTTCTGGGTTTGCTGCAAATCAGAACTGTGCTGCCAATCCCGGTGGTGGTCATCCACAAATAGTTGAAGGGGCATATGCTTGGGGTTTCAATATTTGCAGCTGGCAGCGCCACCTAAATCTCTTGACATGGCCTGAGATACTGCGGCAGTTGGCTCTATCAGCAGGTTTCGGGCCACAGCTGAAGAAAAAGAATATTGAACCAACATATGTGCGGGATGAAATTGAGGGTAACGAAGGCAAAGATATAGTTTCTAACTTACGCAATGGAGCTGCGGCAGGAAACGCTTTTGCTAGAATGCAAGAGAGAGGCTTTTTTAATCAACGCAGGTCAAGGCATCGGTTGACCCCTGGAACGGTCAAATTTGCAGCATTTCATGTTCTTTCACTTGAAGGAAACAATGGCCTTTCTATTTTAGAAGTAGCTGACAGGATTCAGAAATCTGGCCTTCGAGATCTAACGACAAGCAAGACTCCGGAGGCTTCTATAGCTGCTGCTTTGTCAAGAGACTCGAAGCTTTTTGAAAGGACTGCTCCTTCAACATATTGTGTGCGTCCTGCTTATAGGAAAGATCCGGCTGATGCTGAGGAAATACTTTCTACTGCAAGGGAAAGAATTCGCATAGTTAAAAGTGGGTTTCTCAACGGAGAAGATGCTGATTATGCCGAAAGAGACGAAGATTCAGATAGCGATGTGGCTGAGGATCCCGAGGTAGATGATTTAGGCACAGAAATGAGTATAAAGAAAGAAGCTCAACCATCTCATGGACAGACTTTTGAGACACCTTTAGGAAATGGAAGCAGACACAGTGAGATTGTCCAAACTCCTGAAAGTGATGATAGAAACAGAGGTTCAGAATTCTCATCAATGATTCCTGAGCGAATTGAGAGTGCAAAACAAGCCAGCACTTCTTTCAACCTGTCAACTAATACTCTTTATCAAGAAGATACAGATATCGATGAAAGCAAATCTGGTGAACCATGGGAGCGTTTAGAGGCAGCAAAAGCGTTAAAGAAGCAAATGTGGGAAGACTCACAACTCGATAAACGCCGGATAAAAGATGAGCATCTTGTGAAGATGAATTACCCATCTTCTCAAGGTAACAAGACGGAGCCCAACCTGAAAATTACTTTATCAGCGCTTGTTAATTCTGATGAAAAAAATAAGGAGACTTCATCAAACCCTGATATCCAACAAGATTCCTTTAGTGCGATAAAGAATGAACACGACGAATTTAATAATTTTCCTCCTGATGGAAACCTTCAAATGCAAGAGTACCCCAGTGGCATCAACAACGAGAGGTGTCAACAGATGAGTTTTGCTGCTGAGAAGTCTCGCTCCCAGTTAAAATCTGTCATTGGCCATAGGGCAGAAGAGATTTATGTTTATAGATCGTTGCCTTTTGGACAGGACCGCAGGCGAAATAGATACTGGCAGTTTGTTACATCTGCTTCACAAAATGACCCCGGCTGTGGCAGAATTTTCGTTGAACTGCGAAATGGCTGCTGGAGACTTATTGATTCTGTAGAGGGTTTTGATGCTCTCTTAGCGGCTTTGGATGTACGTGGGACCAGGGAATCTCATCTGCACACAGTCTTAAAAAAGATAGAGACTTCCTTTAAGGAAACTAGTCAGAGGAAGATCCAACTAGCTTACGACGGGAAGCAGGATGAAAAATCTACCATATCGAGTTCCAATAAAATGCCTCCTGGTCAAGATTGCAATGCTAATACAGACAGTCCAAGTAGTACTATATGCATAACTGATTCTGATGCTGAGGCTTCATCTTCTTTCACGATTGAGCTTGGAAGGAATGAATCGGAGAAAAAGGGGGCCATAAGGAGATACCTAGATTTTGAAAAGTGGATGTGGAGAGAATGCTTTAAGTCGTTGATGTTATGTGCTGGGAAGTATGGAAAGATGAGGGGGACGCAATTGCTTAATATCTGCAATTATTGCTCCTTTATTTATTCTTTTGAGGACAATCACTGCTCTTCTTGCCACAAAACATATTATTCCTCTGAGAGTTCAAACATTTCTGAGCATGTGACTCAATGCAGGGAGAAACAGAACTCAGACCTTCATCAAATATTAGATGGTTCGATCTCCACCCCTTTAAGAATTAGATTGCTGAAGATGTTATTAGCTTTGATTGAGGATTCGATTTTACCTGAAGCTTTGCAGCCTTTCTGGACTGATTGGCGGCGAAAATCATGGGGTATGAAGTTGATTTCCTCGTCATCTGCCGAAAATCTTCTCCAGATTTTAACTATATTGGAGAGTTCAATTAAGAGGGATCATATATCATCAAACTACGAAACCACCAGTGAACTGTTGGGTCACCCAAATCTATCAGGCTCTTCAGCTGATGATTCTCTCTCTGACGACACCGCTCCTGTACTTCCATGGATGCCATTAACTACAGCTGCAGCTGCTTTAAGACTTGTGGAGTTTGATGCATCAGTCTATTATTCACTGCAGCAGAAAATGATGTCTCCTGATCCGGGATCAGAAATCTTCTCGGTGAGTAAATTTCTACTGCTCTATCTCGCATTGTCTCCTAAAATACTCGCATCTTTTCTTTTACCCAAGACTTCTTTATACTATATTATCAAAATAGTTCCTCATAAGTTTAAGATGGATACTTTACTTCTTTAA 4479 42.93 MEDDLEGEKMKQPELENKTKRKMKTASQLDILEKTYAVETYPSESVRAELSVKLGLSDRQLQMWFCHRRLKDRKTPSAKRLKKDSPPPNAATSVGGNGDELEVRNVENDHGSGSGSALASSSYGHGTDLRRGVQRPGVAIARISSDMPPMKRYYESQQTIAELRAIAFVEAQLGEPLREDGPILGMEFDQLPPDAFGAPIGIYENKYKSKSDLIPVDHQVSGRALHEYQFLPEQPTIRADTYERATSSHYSSPASVQNARVPLVSTGFLHRNDHSASGYPFQGQMSNSNILTQQGSQGHFLPSAVAIYDNVYRKNSIVNSAMDSQYGAHPITQLENPFVASERRATRDEDVLRIERKRKSEGARMAREVEAHEKRIRKELEKQDIMRRKREEQERKEMERHDRERRKEEERLLREKQKEEERLIREQRREMERREKFIQKESIRAEKMKQKEEMRREKKAARLKVAHERAIARRIARESVELIDDERLEIMELAASNKGLPSGQSLDYEALQNIELYRDMLITFPPKSLEMKKPFSNQPWIDSEDNVGNLLMVWRFLITFADVLGLWPFTLDEFVQAFHDYDPRLLGEVHVALLRSIIKDIEDVARTPSGFAANQNCAANPGGGHPQIVEGAYAWGFNICSWQRHLNLLTWPEILRQLALSAGFGPQLKKKNIEPTYVRDEIEGNEGKDIVSNLRNGAAAGNAFARMQERGFFNQRRSRHRLTPGTVKFAAFHVLSLEGNNGLSILEVADRIQKSGLRDLTTSKTPEASIAAALSRDSKLFERTAPSTYCVRPAYRKDPADAEEILSTARERIRIVKSGFLNGEDADYAERDEDSDSDVAEDPEVDDLGTEMSIKKEAQPSHGQTFETPLGNGSRHSEIVQTPESDDRNRGSEFSSMIPERIESAKQASTSFNLSTNTLYQEDTDIDESKSGEPWERLEAAKALKKQMWEDSQLDKRRIKDEHLVKMNYPSSQGNKTEPNLKITLSALVNSDEKNKETSSNPDIQQDSFSAIKNEHDEFNNFPPDGNLQMQEYPSGINNERCQQMSFAAEKSRSQLKSVIGHRAEEIYVYRSLPFGQDRRRNRYWQFVTSASQNDPGCGRIFVELRNGCWRLIDSVEGFDALLAALDVRGTRESHLHTVLKKIETSFKETSQRKIQLAYDGKQDEKSTISSSNKMPPGQDCNANTDSPSSTICITDSDAEASSSFTIELGRNESEKKGAIRRYLDFEKWMWRECFKSLMLCAGKYGKMRGTQLLNICNYCSFIYSFEDNHCSSCHKTYYSSESSNISEHVTQCREKQNSDLHQILDGSISTPLRIRLLKMLLALIEDSILPEALQPFWTDWRRKSWGMKLISSSSAENLLQILTILESSIKRDHISSNYETTSELLGHPNLSGSSADDSLSDDTAPVLPWMPLTTAAAALRLVEFDASVYYSLQQKMMSPDPGSEIFSVSKFLLLYLALSPKILASFLLPKTSLYYIIKIVPHKFKMDTLLL 1492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38548119 38556831 + Bma008135.1 Bma12g00829 92255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00829 1492 MobiDBLite consensus disorder prediction 825 844 - -
Bma12g00829 1492 SMART testlast3 544 603 IPR018501 -
Bma12g00829 1492 MobiDBLite consensus disorder prediction 109 123 - -
Bma12g00829 1492 Coils Coil 376 434 - -
Bma12g00829 1492 ProSiteProfiles DDT domain profile. 544 603 IPR018501 -
Bma12g00829 1492 CDD homeodomain 18 75 IPR001356 GO:0003677
Bma12g00829 1492 Coils Coil 440 464 - -
Bma12g00829 1492 Pfam Homeodomain 18 74 IPR001356 GO:0003677
Bma12g00829 1492 SUPERFAMILY Homeodomain-like 16 74 IPR009057 -
Bma12g00829 1492 MobiDBLite consensus disorder prediction 75 131 - -
Bma12g00829 1492 MobiDBLite consensus disorder prediction 853 893 - -
Bma12g00829 1492 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1071 1143 IPR028941 -
Bma12g00829 1492 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Bma12g00829 1492 ProSiteProfiles HARE-type HTH domain profile. 725 794 IPR007759 GO:0006355
Bma12g00829 1492 MobiDBLite consensus disorder prediction 387 411 - -
Bma12g00829 1492 MobiDBLite consensus disorder prediction 1 25 - -
Bma12g00829 1492 Pfam HB1, ASXL, restriction endonuclease HTH domain 725 792 IPR007759 GO:0006355
Bma12g00829 1492 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 936 IPR044977 GO:0006357
Bma12g00829 1492 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 936 1443 IPR044977 GO:0006357
Bma12g00829 1492 MobiDBLite consensus disorder prediction 857 879 - -
Bma12g00829 1492 MobiDBLite consensus disorder prediction 1162 1186 - -
Bma12g00829 1492 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 936 - -
Bma12g00829 1492 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 936 1443 - -
Bma12g00829 1492 Gene3D - 8 89 - -
Bma12g00829 1492 MobiDBLite consensus disorder prediction 827 844 - -
Bma12g00829 1492 Pfam DDT domain 546 600 IPR018501 -
Bma12g00829 1492 SMART HOX_1 17 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00301 Bma-Chr11:2847798 Bma12g00829 Bma-Chr12:38548119 1.72E-14 dispersed
Bma11g00420 Bma-Chr11:4519214 Bma12g00829 Bma-Chr12:38548119 0 dispersed
Bma12g00829 Bma-Chr12:38548119 Bma14g01157 Bma-Chr14:16690084 1.12E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58140 PF15613 WSD 2.20E-12 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00829 - - vvi:100250601 1711.43