Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00836 ATGCCTAAGAACAGAGGTAAGAGAGGAAAGAACAGGAAGAGGGGAAAGAACGAAGCGGACGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGACGGACAAGAATATGCCCAAGTTCTCCAAATGTTGGGTAATGGCAGATGCGAAGCAATGTGCATAGATGAGACAAAACGACTATGCCACATCCGAGGAAAGATGCACAAGCCAGTGTGGATTGCAGCCGGTGATATCATTCTCGTCGACCTTGGTGATTATCAGGATGACAAAGCTGACGTAATCCTCAAATACATGCCTGATAAGGCTAGGCTTTTGAAGGCTTATGAGGAGCTTCCTGATAACACTCGTCTCAACGAGGGATTTGCTGTTGGGATCGACCGCGAGGCTGGAGGCAAAGATTACATCGAGTTTGAAGATATCGATTAA 420 46.67 MPKNRGKRGKNRKRGKNEADDEKRELVFKEDGQEYAQVLQMLGNGRCEAMCIDETKRLCHIRGKMHKPVWIAAGDIILVDLGDYQDDKADVILKYMPDKARLLKAYEELPDNTRLNEGFAVGIDREAGGKDYIEFEDID 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38660179 38660598 + Bma008146.1 Bma12g00836 92262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00836 139 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bma12g00836 139 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bma12g00836 139 MobiDBLite consensus disorder prediction 1 25 - -
Bma12g00836 139 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Bma12g00836 139 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Bma12g00836 139 PANTHER EIF-1A 1 139 IPR001253 GO:0003743|GO:0006413
Bma12g00836 139 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 109 IPR001253 GO:0003743|GO:0006413
Bma12g00836 139 SUPERFAMILY Nucleic acid-binding proteins 2 122 IPR012340 -
Bma12g00836 139 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 139 - -
Bma12g00836 139 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Bma12g00836 139 Gene3D - 2 139 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00836 Bma-Chr12:38660179 Bma12g00845 Bma-Chr12:39196213 2.67E-84 dispersed
Bma12g00836 Bma-Chr12:38660179 Bma12g00837 Bma-Chr12:38663945 2.67E-84 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00836 K03236 - atr:18445930 235.343