Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00842 ATGGTGTCTGTTTCTGGCGAACCAATGCAAAGGCTGGGTGCATATATGTTGGAAGGGCTTGTTGCTCGACTATCGACATCGGGTAGTTGCATTTACAAAGCTTTGAAGGGTAAAGAACCAGCCAGTAGTGAGCTTCTCTCTTACATGCATACTCTCTACGAGGCCTGTCCCTACTTCAAATTTGGATACATGTCTGCAAATGGTGCAATTGCAGAAGCCATGAAAGATGAAGACAGAGTTCACATTATAGATTTCCAGATAGCTCAAGGAAGTCAGTGGATCACGCTCATTCAAGCCTTTGCAGCTCGCCCGGGTGGACCTCCCCACATAAAAATAACGGCAGGGATTGATGATTCCATGTCAGCCTACGCTCGAGGAGGAGGACATTATATTGTTGGAAAACGCCTTTCCAAGCTAGCAAAGACGTTCAAAGTCCCGTTTGAGTTTTGTGCAGCAGCCGTGTCTGGTCGAGAGGTTCAGCCCGAAAATCTCAATGTTCAACCGGGCGAGGCTGTTGCTGTGAATTTTGCTTTTATCCTTCATCACATGCCTGATGAGAGTGTAAGCACGGAAAATCACAGAGACAAGCTCTTAAGGCTGGCTAAGAGCCTATCTCCGAAGGTAGTGACGCTTGTCGAGCAAGAATCTAACACAAATACCGCAACTTTCTGTTCTCGTTTCGGTGAGGCTCTCGATTACTATAATGCTATGTTTGAGTCAATCGATGCCACTCTTCCAAGGGAGCACAAGGACAGAATTAACATAGAGCAACACTGCCTAGCCCGAGAAGTCGTTAATACAATAGCTTGTGAAGGGCCGGAGAGAGTCGAAAGACACGAGCTTCTCGGGAAATGGAGGTCCCGTTTTAGGATGGCGGGATTTTCTCCGTATTCTTTGAGCTCTCTGGTCAATTCAACCATTAAAACACTGTTAGAGAACTACTGTAATAGATATAGACTTGAGGAGAGAGAAGGGGCTCTCTTTCTTGGTTGGATGGACAGAGATTTGGTTGTTTCTTCTGCATGGAAATGA 1032 46.03 MVSVSGEPMQRLGAYMLEGLVARLSTSGSCIYKALKGKEPASSELLSYMHTLYEACPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIKITAGIDDSMSAYARGGGHYIVGKRLSKLAKTFKVPFEFCAAAVSGREVQPENLNVQPGEAVAVNFAFILHHMPDESVSTENHRDKLLRLAKSLSPKVVTLVEQESNTNTATFCSRFGEALDYYNAMFESIDATLPREHKDRINIEQHCLAREVVNTIACEGPERVERHELLGKWRSRFRMAGFSPYSLSSLVNSTIKTLLENYCNRYRLEEREGALFLGWMDRDLVVSSAWK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38829958 38831138 - Bma008154.1 Bma12g00842 92268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00842 343 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 1 343 - -
Bma12g00842 343 Pfam GRAS domain family 2 343 IPR005202 -
Bma12g00842 343 ProSiteProfiles GRAS family profile. 1 343 IPR005202 -
Bma12g00842 343 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 343 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01308 Bma12g00842 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00842 Bma-Chr12:38829958 Bma13g01108 Bma-Chr13:44033288 0 dispersed
Bma01g00877 Bma-Chr1:8245315 Bma12g00842 Bma-Chr12:38829958 6.46E-13 transposed
Bma12g00842 Bma-Chr12:38829958 Bma02g01308 Bma-Chr2:55213484 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58142 PF03514 GRAS 1.60E-124 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00842 - - qsu:112028510 581.252