Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00842 ATGGTGTCTGTTTCTGGCGAACCAATGCAAAGGCTGGGTGCATATATGTTGGAAGGGCTTGTTGCTCGACTATCGACATCGGGTAGTTGCATTTACAAAGCTTTGAAGGGTAAAGAACCAGCCAGTAGTGAGCTTCTCTCTTACATGCATACTCTCTACGAGGCCTGTCCCTACTTCAAATTTGGATACATGTCTGCAAATGGTGCAATTGCAGAAGCCATGAAAGATGAAGACAGAGTTCACATTATAGATTTCCAGATAGCTCAAGGAAGTCAGTGGATCACGCTCATTCAAGCCTTTGCAGCTCGCCCGGGTGGACCTCCCCACATAAAAATAACGGCAGGGATTGATGATTCCATGTCAGCCTACGCTCGAGGAGGAGGACATTATATTGTTGGAAAACGCCTTTCCAAGCTAGCAAAGACGTTCAAAGTCCCGTTTGAGTTTTGTGCAGCAGCCGTGTCTGGTCGAGAGGTTCAGCCCGAAAATCTCAATGTTCAACCGGGCGAGGCTGTTGCTGTGAATTTTGCTTTTATCCTTCATCACATGCCTGATGAGAGTGTAAGCACGGAAAATCACAGAGACAAGCTCTTAAGGCTGGCTAAGAGCCTATCTCCGAAGGTAGTGACGCTTGTCGAGCAAGAATCTAACACAAATACCGCAACTTTCTGTTCTCGTTTCGGTGAGGCTCTCGATTACTATAATGCTATGTTTGAGTCAATCGATGCCACTCTTCCAAGGGAGCACAAGGACAGAATTAACATAGAGCAACACTGCCTAGCCCGAGAAGTCGTTAATACAATAGCTTGTGAAGGGCCGGAGAGAGTCGAAAGACACGAGCTTCTCGGGAAATGGAGGTCCCGTTTTAGGATGGCGGGATTTTCTCCGTATTCTTTGAGCTCTCTGGTCAATTCAACCATTAAAACACTGTTAGAGAACTACTGTAATAGATATAGACTTGAGGAGAGAGAAGGGGCTCTCTTTCTTGGTTGGATGGACAGAGATTTGGTTGTTTCTTCTGCATGGAAATGA 1032 46.03 MVSVSGEPMQRLGAYMLEGLVARLSTSGSCIYKALKGKEPASSELLSYMHTLYEACPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIKITAGIDDSMSAYARGGGHYIVGKRLSKLAKTFKVPFEFCAAAVSGREVQPENLNVQPGEAVAVNFAFILHHMPDESVSTENHRDKLLRLAKSLSPKVVTLVEQESNTNTATFCSRFGEALDYYNAMFESIDATLPREHKDRINIEQHCLAREVVNTIACEGPERVERHELLGKWRSRFRMAGFSPYSLSSLVNSTIKTLLENYCNRYRLEEREGALFLGWMDRDLVVSSAWK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38829958 38831138 - Bma008154.1 Bma12g00842 92268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00842 343 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 1 343 - -
Bma12g00842 343 Pfam GRAS domain family 2 343 IPR005202 -
Bma12g00842 343 ProSiteProfiles GRAS family profile. 1 343 IPR005202 -
Bma12g00842 343 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 343 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00842 - - - qsu:112028510 581.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g01308 Bma12g00842 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00842 Bma-Chr12:38829958 Bma13g01108 Bma-Chr13:44033288 0 dispersed
Bma01g00877 Bma-Chr1:8245315 Bma12g00842 Bma-Chr12:38829958 6.46E-13 transposed
Bma12g00842 Bma-Chr12:38829958 Bma02g01308 Bma-Chr2:55213484 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g674 Blo02g00135 Blo15g00454 Bda06g00409 Bda13g00599 . . . . . . Cma02g00217 Cma20g00670 . Car20g00575 . . . . . . . . . . . . . . . . . Cone3ag1294 Cone10ag1246 . . . . Chy11g00700 . . . . . Bpe14g00729 Bpe07g00645 Bma02g01308 Bma12g00842 . Cmo02g00224 Cmo20g00673 . . . . Cpe16g00391 Cpe05g01400 Bhi10g01329 . . . . . . . . . . . . . . Csa06g00941 . Cme11g00929
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01386 . 76 743 GRAS Transcription Factor Family AT2G37650 56.2 4.4e-207 718.0
Bma04g00970 BCT,CCT 178 539 GRAS Transcription Factor Family AT2G45160 51.4 3.5e-94 342.8
Bma04g01386 . 287 744 GRAS Transcription Factor Family AT3G46600 52.0 9.3e-128 454.1
Bma05g00091 . 37 453 GRAS Transcription Factor Family AT3G49950 61.5 5.1e-139 491.1
Bma03g01138 . 1 318 GRAS Transcription Factor Family AT3G49950 58.6 9.1e-96 347.4
Bma07g00096 . 99 788 GRAS Transcription Factor Family AT1G07530 51.8 1.6e-194 676.4
Bma14g00512 . 179 613 GRAS Transcription Factor Family AT1G07530 53.3 3.0e-132 469.5
Bma10g00631 . 21 453 GRAS Transcription Factor Family AT5G41920 64.6 1.8e-144 509.2
Bma14g01585 . 331 711 GRAS Transcription Factor Family AT5G41920 56.2 1.5e-114 409.8
Bma01g00877 CCT,ECH 267 446 GRAS Transcription Factor Family AT5G52510 51.1 1.4e-45 181.4
Bma06g00126 . 1 593 GRAS Transcription Factor Family AT5G66770 53.8 5.2e-161 564.7
Bma13g01108 . 18 508 GRAS Transcription Factor Family AT1G50600 57.8 3.1e-165 578.6
Bma02g01308 BCT 92 513 GRAS Transcription Factor Family AT1G50600 63.6 4.5e-156 548.1
Bma07g00028 . 108 546 GRAS Transcription Factor Family AT1G50600 56.1 1.6e-137 486.5
Bma11g00034 . 103 541 GRAS Transcription Factor Family AT1G50600 56.1 1.4e-136 483.4
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT1G50600 69.1 2.6e-135 479.2
Bma14g00364 . 194 572 GRAS Transcription Factor Family AT1G50600 61.2 4.9e-134 474.9
Bma01g02109 CCT,ECH 210 579 GRAS Transcription Factor Family AT1G50600 51.1 1.1e-104 377.5
Bma14g00583 . 1 621 GRAS Transcription Factor Family AT1G63100 53.1 8.4e-168 587.4
Bma06g01086 CCT 33 572 GRAS Transcription Factor Family AT1G14920 65.5 4.8e-198 687.6
Bma01g00461 . 33 577 GRAS Transcription Factor Family AT1G14920 64.9 1.3e-195 679.5
Bma02g00512 . 47 586 GRAS Transcription Factor Family AT1G14920 63.0 2.6e-191 665.2
Bma01g01147 . 45 574 GRAS Transcription Factor Family AT1G14920 63.7 9.5e-186 646.7
Bma06g01070 . 1 358 GRAS Transcription Factor Family AT1G14920 76.6 1.6e-161 566.2
Bma02g00512 . 26 587 GRAS Transcription Factor Family AT1G66350 61.8 3.0e-189 658.3
Bma01g01147 . 40 575 GRAS Transcription Factor Family AT1G66350 63.3 4.7e-182 634.4
Bma01g00461 . 1 576 GRAS Transcription Factor Family AT1G66350 54.9 2.1e-166 582.4
Bma06g01086 CCT 1 573 GRAS Transcription Factor Family AT1G66350 54.9 3.4e-164 575.1
Bma06g01070 . 1 359 GRAS Transcription Factor Family AT1G66350 63.9 2.2e-131 466.1
Bma07g00096 . 233 788 GRAS Transcription Factor Family AT1G07520 52.5 5.6e-154 541.2
Bma02g01308 BCT 5 513 GRAS Transcription Factor Family AT5G48150 62.1 1.2e-179 626.3
Bma13g01108 . 78 508 GRAS Transcription Factor Family AT5G48150 63.9 1.4e-162 569.7
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT5G48150 78.8 4.7e-155 544.7
Bma07g00028 . 16 546 GRAS Transcription Factor Family AT5G48150 52.9 3.6e-147 518.5
Bma11g00034 . 12 541 GRAS Transcription Factor Family AT5G48150 51.5 4.5e-142 501.5
Bma14g00364 . 79 572 GRAS Transcription Factor Family AT5G48150 52.9 6.1e-139 491.1
Bma01g02109 CCT,ECH 188 579 GRAS Transcription Factor Family AT5G48150 51.8 2.0e-113 406.4
Bma06g01086 CCT 35 572 GRAS Transcription Factor Family AT2G01570 66.2 4.7e-202 701.0
Bma01g00461 . 35 577 GRAS Transcription Factor Family AT2G01570 64.7 2.9e-196 681.8
Bma02g00512 . 49 584 GRAS Transcription Factor Family AT2G01570 63.9 4.0e-193 671.4
Bma01g01147 . 47 572 GRAS Transcription Factor Family AT2G01570 62.5 2.6e-184 642.1
Bma06g01070 . 1 358 GRAS Transcription Factor Family AT2G01570 78.6 1.9e-163 572.8
Bma02g00512 . 26 587 GRAS Transcription Factor Family AT1G66350 61.8 3.0e-189 658.3
Bma01g01147 . 40 575 GRAS Transcription Factor Family AT1G66350 63.3 4.7e-182 634.4
Bma01g00461 . 1 576 GRAS Transcription Factor Family AT1G66350 54.9 2.1e-166 582.4
Bma06g01086 CCT 1 573 GRAS Transcription Factor Family AT1G66350 54.9 3.4e-164 575.1
Bma06g01070 . 1 359 GRAS Transcription Factor Family AT1G66350 63.9 2.2e-131 466.1
Bma02g00512 . 49 584 GRAS Transcription Factor Family AT3G03450 62.8 7.4e-186 647.1
Bma01g01147 . 47 572 GRAS Transcription Factor Family AT3G03450 63.2 2.2e-182 635.6
Bma01g00461 . 10 577 GRAS Transcription Factor Family AT3G03450 55.7 2.5e-165 578.9
Bma06g01086 CCT 35 572 GRAS Transcription Factor Family AT3G03450 57.8 2.5e-165 578.9
Bma06g01070 . 2 358 GRAS Transcription Factor Family AT3G03450 65.7 1.9e-136 483.0
Bma01g01147 . 46 573 GRAS Transcription Factor Family AT5G17490 60.6 1.1e-165 580.1
Bma02g00512 . 48 585 GRAS Transcription Factor Family AT5G17490 59.4 3.1e-165 578.6
Bma06g01086 CCT 1 578 GRAS Transcription Factor Family AT5G17490 50.2 2.7e-145 512.3
Bma01g00461 . 1 577 GRAS Transcription Factor Family AT5G17490 51.0 7.4e-143 504.2
Bma06g01070 . 2 356 GRAS Transcription Factor Family AT5G17490 62.1 2.7e-124 442.6
Bma01g02109 CCT,ECH 1 579 GRAS Transcription Factor Family AT1G21450 60.0 1.1e-182 636.7
Bma02g01308 BCT 138 513 GRAS Transcription Factor Family AT1G21450 51.2 4.1e-113 405.6
Bma14g00364 . 204 572 GRAS Transcription Factor Family AT1G21450 53.2 1.5e-110 397.1
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT1G21450 53.2 2.7e-104 376.3
Bma04g01386 . 348 744 GRAS Transcription Factor Family AT5G59450 53.6 1.8e-124 443.4
Bma11g00034 . 1 541 GRAS Transcription Factor Family AT4G17230 61.4 8.8e-176 613.6
Bma07g00028 . 1 546 GRAS Transcription Factor Family AT4G17230 58.3 2.2e-171 599.0
Bma02g01308 BCT 16 513 GRAS Transcription Factor Family AT4G17230 50.5 7.1e-133 471.1
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT4G17230 61.5 6.0e-116 414.8
Bma02g01308 BCT 134 513 GRAS Transcription Factor Family AT2G04890 67.4 5.0e-150 527.7
Bma13g01108 . 115 508 GRAS Transcription Factor Family AT2G04890 62.7 1.4e-147 519.6
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT2G04890 69.7 3.1e-136 481.9
Bma14g00364 . 178 572 GRAS Transcription Factor Family AT2G04890 56.6 2.0e-127 452.6
Bma11g00034 . 128 541 GRAS Transcription Factor Family AT2G04890 56.0 7.2e-125 444.1
Bma07g00028 . 166 546 GRAS Transcription Factor Family AT2G04890 59.3 1.6e-124 443.0
Bma14g00764 . 1 464 GRAS Transcription Factor Family AT1G50420 66.7 5.8e-174 607.4
Bma03g00439 . 1 464 GRAS Transcription Factor Family AT1G50420 58.2 6.0e-155 544.3
Bma04g00970 BCT,CCT 183 539 GRAS Transcription Factor Family AT4G00150 58.2 5.7e-109 391.7
Bma14g01585 . 117 709 GRAS Transcription Factor Family AT3G54220 68.6 2.9e-205 711.8
Bma10g00631 . 86 451 GRAS Transcription Factor Family AT3G54220 62.8 1.5e-129 460.3
Bma09g00766 . 41 404 GRAS Transcription Factor Family AT3G54220 54.6 5.9e-113 405.2
Bma09g00015 BCT 1 485 GRAS Transcription Factor Family AT4G37650 53.9 2.0e-151 532.7
Bma09g00014 . 1 485 GRAS Transcription Factor Family AT4G37650 53.9 2.0e-151 532.7
Bma15g01112 . 53 260 GRAS Transcription Factor Family AT4G37650 65.7 1.1e-77 287.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003195 1 8 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58142 PF03514 GRAS 1.60E-124 CL0063 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00842 Bma_Chr12 FPKM 22.209656 22.622911 23.317326 22.97208 21.433613 23.179207 24.300688 28.955496 28.769897 28.2721