Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00845 ATGCCGAAGAACAAAGGTAAGGGAGGAAAGAACAGGAAGAGGGGAAAGAACGAAGCGGACGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGACGGACAAGAATATGCCCAAGTTCTCCGAATGTTGGGTAATGGCAGATGCGAAGCAATGTGCATCGACGGGACAAAACGACTATGCCACATCCGAGGAAAGATGCACAAGAAGGTGTGGATTGCAGCCGGTGATATCATTCTCGTCGGCCTTCGTGATTATCAGGACGATAAAGCTGACGTAATCCTCAAATACATGCCTGATGAGGCTAGGCTTTTGAAGGCTTATGGGGAGCTTCCTGATAACACTCGTCTCAACGAGGGCATTGCTGGTGGGATTGACGACGAGGATGAGGCTGGAGGCGAAGATTACATCGAGTTTGAAGATGAAGATATCGATAAGATCTAG 438 48.4 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDNTRLNEGIAGGIDDEDEAGGEDYIEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39196213 39196650 - Bma008160.1 Bma12g00845 92271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00845 145 MobiDBLite consensus disorder prediction 1 25 - -
Bma12g00845 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Bma12g00845 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Bma12g00845 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Bma12g00845 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bma12g00845 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Bma12g00845 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Bma12g00845 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bma12g00845 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Bma12g00845 145 Gene3D - 2 145 IPR012340 -
Bma12g00845 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Bma12g00845 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00836 Bma-Chr12:38660179 Bma12g00845 Bma-Chr12:39196213 2.67E-84 dispersed
Bma12g00837 Bma-Chr12:38663945 Bma12g00845 Bma-Chr12:39196213 1.26E-102 proximal
Bma12g00808 Bma-Chr12:37637782 Bma12g00845 Bma-Chr12:39196213 3.81E-97 transposed
Bma12g00845 Bma-Chr12:39196213 Bma08g00659 Bma-Chr8:41052420 7.34E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00845 K03236 - fve:101293411 237.654