Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00846 ATGGCGGATTCAGACAACGAATCAGGAGGGCATAACAGCAACACGAATAGCGAGCACTCGAGGGAGCAAGATAGATTCTTGCCCATAGCCAATGTAAGCAGAATAATGAAGAAAGCACTACCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTTCAAGAATGTGTATCGGAGTTCATCAGCTTCATCACCGGCGAGGCTTCCGACAAGTGCCAGAGGGAAAAAAGGAAGACGATCAACGGCGACGATTTATTGTGGGCCATGACTACTTTAGGCTTCGAAGAGTACGTAGAGCCTCTGAAAATTTATCTGCAGAAGTACAGAGAAACGGAAGGAGAGAAGACTTCTGTCGGAAGACAGGGTGAAAAAGACGGCGGCATAGGTGGGTCCAGCTCCGCCAGCGCTGATGCCGCCGGTGCTGTGAGTGGTGGCGGCGGCTTCAATGGAGTCGGCGGGAATGTACGGGGGGATGATGATGATGGGCCATCATCAGGGACACGCATACGGTCCAGGCGGATATCATCGGATGGGAATCGGCGGTCAGAAAGACGGAACCGGCGGGCCAGCTTCCGGCAACCGGTGAGGGCGTAG 597 53.27 MADSDNESGGHNSNTNSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYRETEGEKTSVGRQGEKDGGIGGSSSASADAAGAVSGGGGFNGVGGNVRGDDDDGPSSGTRIRSRRISSDGNRRSERRNRRASFRQPVRA 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39281855 39282451 - Bma008164.1 Bma12g00846 92272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00846 198 MobiDBLite consensus disorder prediction 112 198 - -
Bma12g00846 198 MobiDBLite consensus disorder prediction 1 24 - -
Bma12g00846 198 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 157 - -
Bma12g00846 198 SUPERFAMILY Histone-fold 23 125 IPR009072 GO:0046982
Bma12g00846 198 Gene3D Histone, subunit A 13 141 IPR009072 GO:0046982
Bma12g00846 198 MobiDBLite consensus disorder prediction 1 16 - -
Bma12g00846 198 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bma12g00846 198 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bma12g00846 198 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bma12g00846 198 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma12g00846 198 MobiDBLite consensus disorder prediction 162 191 - -
Bma12g00846 198 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Bma12g00846 198 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00961 Bma-Chr8:48622251 Bma12g00846 Bma-Chr12:39281855 2.58E-58 dispersed
Bma08g01142 Bma-Chr8:50456198 Bma12g00846 Bma-Chr12:39281855 1.01E-56 dispersed
Bma10g00590 Bma-Chr10:7262662 Bma12g00846 Bma-Chr12:39281855 1.16E-48 dispersed
Bma12g00846 Bma-Chr12:39281855 Bma13g01113 Bma-Chr13:44263196 7.69E-74 dispersed
Bma14g00951 Bma-Chr14:10825725 Bma12g00846 Bma-Chr12:39281855 1.58E-44 dispersed
Bma10g01262 Bma-Chr10:44883412 Bma12g00846 Bma-Chr12:39281855 2.18E-43 transposed
Bma11g00227 Bma-Chr11:2029420 Bma12g00846 Bma-Chr12:39281855 3.71E-13 transposed
Bma03g00997 Bma-Chr3:10874010 Bma12g00846 Bma-Chr12:39281855 2.31E-58 transposed
Bma13g00635 Bma-Chr13:15209636 Bma12g00846 Bma-Chr12:39281855 1.32E-33 transposed
Bma12g00846 Bma-Chr12:39281855 Bma02g01299 Bma-Chr2:55150543 3.12E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58143 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00846 K08065 - nnu:104606630 236.113