Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00850 ATGTCGTCTAAGTCTACGAACAAGACGAACTGTTCAAGAAGCAGCTCTACCAGATCGAAACATGGATCTCGAGTGGTTACACAGACTCCCATTGACGCTAAACTCCATGTTGAATTCGAAGAGACTGAGCAGGGTTTTGATTACTCCACTTCCATTGACTTCAATCTCTCTTGCTCCACCAGCAATGTTCCATCGTCAACAGTTTCGGCTTACCTTCAAAAGATGCAGAGGGGAAAGCTGATTCAACCCTTTGGCTGTATGATTGCCGTTGATGAGGAGAAGTTTTCGGTTCTTGCATATAGCGAAAATGCCCCCGAAATGCTGGACTTGGCCCCACTCGCTGTTCCGAGCATTGAGCAGCAAGATGCTTTGACTTTCGGAACGGATGTTCGAACACTTTTTCAGACCTCGGGTGCTGCTGCCCTGCACAAAGCTAGCAAAATTAGGGAAGTCAACCTTCTAAATCCTATATTGCTTCACTGTAAAACTTCAGGAAAGCCCTTTTATGCAATTCTTCATCGCATTGATGTTGGTTTAGTCATAGATTTAGAACCTGTTAATCTAGCAGATGTACCGGTGACAGCTGCCGGGGCATTGAAATCGTATAAACTTGCTGCCAAAGCCATCTCAAGATTGCAGTCTCTACCAAGTAGGAATATATCTCTGCTGTGTGATGTGTTGGTCAAAGAAGTTAGTGATTTAACGGGGTATGATCGGGTTATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTTGTAGCTGAGTGCCACAGGCCCGATTTGGAACCTTATCTGGGTTTACATTACCCGGCTACAGATATACCTCAAGCCTCGAGATTTCTGTTTATGAAGAACAAAGTAAGGATGATATGTGATTGTTTGGCAACTCCAGTTAAAGTTATTCAAGACAGCAAATTGACTCAGCCATTGAGTCTTTGTGGATCGGTTCTGAGATCTCCTCACGGCTGTCATGGACAATATATGGCAAATATGGGTTCAATTGCATCCCTTGTTATGTCTGTAACGATCGACGAGGAGGATAATGAGGTAGAGAGCGATCAGCAGAAGGGAAGAAAATTGTGGGGCTTAGTGGTTTGTCATCACACGAGCCCTTGGTTTATCCCATTTCCTTTGCGATATGCCTGCGAGTTCTTGATTCAAGTTTTCAGTATTCAAATCAACAAAGAAGTTGAGCTGGCTGCTCAATTGAGGGAGAAGCATATTTTGCAAACTCAAACTGTTCTTTGCGATATGCTTCTTAGAGATGTCCCTGTGGGAATCGTTACACAATCACCAAATATAATGGATCTCGTCAATTGCGATGGAGCCGCTCTTTATTACAAGAAGAAATTCTGGGTGCTAGGAGTTACTCCGGCTGAAGCACAAATTAGAGATATAGCTGATTGGCTTCTTCAGAATCACAGCGGGAGCACTGGGCTGAGTACGGATAGTCTCATGGAAGCTGGCTACCCTGGAGCTTCTGGTCTCAGCAATGAGGTTTGCGGGATGGCTGCCATTAAAATCACAGGAAAGGATTTTCTCTTTTGGTTTCGATCCCACATGGCGAAGGAAATCAAGTGGGGCGGAGCAAAACACGATCCGAACGACAAGGACGATGGGCGGAAGATGCATCCCAGGTCGTCATTCAAGGCTTTCTTGGAGGTTGTGAAGCAGAGAAGTTTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCTTTACAGCTGATAATGCGAGGATCTCTACAGGACGAGATAGAGGACTACTCCAAAATAATTGTGAATGTTCCCTCAGCAGATGACACGTTACAAAGTTTGGATGAATTGCGGGTCGTAACGAATGAAATGGTCCGCCTTATCGAGACAGCTGCCGTCCCCATCTTGGCTGTTGATGCCTCGGGCATTATAAACGGGTGGAACATCAAAGCTAGTGAACTAACGGGAGTGCCAGTACAAGAAGCAATTGGTAGACTCTTTGTCGATGTTGTTGCTGATGAGTCAGTCGAGGTGGTGAAGAATATGCTTTCCTTGGCTCTGCAAGGCATAGAAGAACGAAATGTTGAAATTAAACTCAAAACATACGGGCCCCAGCAAAGAAATGGCTCGATTATTTTAGTAGTCAATGCTTGTTGTAGTCGAGATACGAAAGAAAATATCGTGGGGAGTTGCTTTATCGGACAAGATGTGACTGGACAGAGACTCATTATGGACCAATATACTCGTCTCCAAGGTGATTATAACGGAATTATGCAGAGCCCCTCTACACTTATTCCTCCGATTTTCATGACCGATGAGCATGGCCGATGCTCGGAATGGAACGATGCTATGCAAACATTATCTGGTTTGAAGAGAGAAGAAGCAATCGATAAGATGCTTCTTGGAGAGGTCTTCACCATCAATAGTGTCGGTTGTCGGGTCAAAGATCAAGACACATTGACAAAGCTTAAAATTTTGTTTAATAGGGTGGTTTCAAACCAGGATGTTGACAAATTGTTGTTCGGCTTTTTCGATAGGCAGAACAATTACGTTGAAGCTTTACTTTCTGCAGATAAAAGGGTCGATGCAGAGGGGAGAATGACGAGAGTTTTATGTTTTTTGCATGTGGCGAGTCTGGAACTTAAACATGCTATCCATATGCAGAAAATATCGGAACAGGCTGCGGATGATAGCGTCAAGAAGTTGACGTACCTTCGGAGGGAGATCAGAAAACCGCTCGGTGGGATTCAGTTTATGCAGAATCTCATGGGCTCTTCCGATATAAGCGCAGAGCAAAAGCAGCTACTCAAGATAAGCACATCCTGTCAGGATCAGTTGGTCAAGATTGTAGATGACACTGATATCGAAAATATCGATGAATGCTTTATGGAGATGAGCTCTGGTGAATTCAACCTGGGAGATGTTCTTGAGGTTGTCATGAATCAAGTCATGGTTTTAGGCCAAGAACGACGAATCCAGGTCATCCTCGATTCTCCTTCAGTTGCGTCATCGTTTCATTTGTATGGCGACAATTTGAGGCTTCAGCAGGTACTTTCAGATTTTTTGAGTAGCGCTGTCGTCTTTGTACCGACATCTGAAGGATCTTCAGTTTCCCTTCAAGTGATTCCGAAGAAAAAACATATCGGATCCAAAATGTGTATCATTCATCTCGAATTTAGGATCGTTCATCCATCGCCTGGAATTCCCGAGATTTTAATCCAAGAGATGTTTCATCACAACAATAACGTCTCAAAGGAAGGTCTTAGTCTATATATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACCGTACAATACCTAAGAGAAGCAGAGAGGTCATCCTTCATTATTATAGTCGAATTCCCACAAGTAAAAAAGATTGACAAATGA 3369 43.63 MSSKSTNKTNCSRSSSTRSKHGSRVVTQTPIDAKLHVEFEETEQGFDYSTSIDFNLSCSTSNVPSSTVSAYLQKMQRGKLIQPFGCMIAVDEEKFSVLAYSENAPEMLDLAPLAVPSIEQQDALTFGTDVRTLFQTSGAAALHKASKIREVNLLNPILLHCKTSGKPFYAILHRIDVGLVIDLEPVNLADVPVTAAGALKSYKLAAKAISRLQSLPSRNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAECHRPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQDSKLTQPLSLCGSVLRSPHGCHGQYMANMGSIASLVMSVTIDEEDNEVESDQQKGRKLWGLVVCHHTSPWFIPFPLRYACEFLIQVFSIQINKEVELAAQLREKHILQTQTVLCDMLLRDVPVGIVTQSPNIMDLVNCDGAALYYKKKFWVLGVTPAEAQIRDIADWLLQNHSGSTGLSTDSLMEAGYPGASGLSNEVCGMAAIKITGKDFLFWFRSHMAKEIKWGGAKHDPNDKDDGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLIMRGSLQDEIEDYSKIIVNVPSADDTLQSLDELRVVTNEMVRLIETAAVPILAVDASGIINGWNIKASELTGVPVQEAIGRLFVDVVADESVEVVKNMLSLALQGIEERNVEIKLKTYGPQQRNGSIILVVNACCSRDTKENIVGSCFIGQDVTGQRLIMDQYTRLQGDYNGIMQSPSTLIPPIFMTDEHGRCSEWNDAMQTLSGLKREEAIDKMLLGEVFTINSVGCRVKDQDTLTKLKILFNRVVSNQDVDKLLFGFFDRQNNYVEALLSADKRVDAEGRMTRVLCFLHVASLELKHAIHMQKISEQAADDSVKKLTYLRREIRKPLGGIQFMQNLMGSSDISAEQKQLLKISTSCQDQLVKIVDDTDIENIDECFMEMSSGEFNLGDVLEVVMNQVMVLGQERRIQVILDSPSVASSFHLYGDNLRLQQVLSDFLSSAVVFVPTSEGSSVSLQVIPKKKHIGSKMCIIHLEFRIVHPSPGIPEILIQEMFHHNNNVSKEGLSLYISQKLVKIMNGTVQYLREAERSSFIIIVEFPQVKKIDK 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39312161 39316402 + Bma008168.1 Bma12g00850 92276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Bma12g00850 1122 PANTHER PHYTOCHROME C 1 1117 - -
Bma12g00850 1122 Pfam GAF domain 220 398 IPR003018 GO:0005515
Bma12g00850 1122 SMART HKATPase_4 1002 1118 IPR003594 -
Bma12g00850 1122 PIRSF Phytochrome_conventional 2 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma12g00850 1122 SUPERFAMILY GAF domain-like 406 584 - -
Bma12g00850 1122 Gene3D - 200 559 IPR029016 -
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 806 IPR035965 -
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 724 IPR035965 -
Bma12g00850 1122 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Bma12g00850 1122 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Bma12g00850 1122 CDD HisKA 895 945 IPR003661 GO:0000155|GO:0007165
Bma12g00850 1122 Gene3D - 929 1110 IPR036890 -
Bma12g00850 1122 Gene3D PAS domain 755 868 - -
Bma12g00850 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Bma12g00850 1122 ProSiteProfiles Histidine kinase domain profile. 897 1118 IPR005467 -
Bma12g00850 1122 SMART pas_2 745 814 IPR000014 -
Bma12g00850 1122 SMART pas_2 615 681 IPR000014 -
Bma12g00850 1122 MobiDBLite consensus disorder prediction 1 26 - -
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 729 865 IPR035965 -
Bma12g00850 1122 Gene3D PAS domain 76 322 - -
Bma12g00850 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1111 IPR036890 -
Bma12g00850 1122 MobiDBLite consensus disorder prediction 1 27 - -
Bma12g00850 1122 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Bma12g00850 1122 Gene3D PAS domain 602 745 - -
Bma12g00850 1122 TIGRFAM sensory_box: PAS domain S-box protein 620 732 IPR000014 -
Bma12g00850 1122 CDD HATPase_Phy-like 1001 1114 IPR044767 -
Bma12g00850 1122 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bma12g00850 1122 Pfam PAS fold 746 868 IPR013767 GO:0006355
Bma12g00850 1122 Pfam PAS fold 616 730 IPR013767 GO:0006355
Bma12g00850 1122 CDD PAS 757 868 IPR000014 -
Bma12g00850 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1112 IPR003594 -
Bma12g00850 1122 Gene3D - 403 576 IPR043150 -
Bma12g00850 1122 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1117 - -
Bma12g00850 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bma12g00850 1122 CDD PAS 624 730 IPR000014 -
Bma12g00850 1122 SUPERFAMILY GAF domain-like 199 395 - -
Bma12g00850 1122 SMART gaf_1 219 408 IPR003018 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00850 - - - qsu:111989287 1800.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00611 Bma-Chr1:5522148 Bma12g00850 Bma-Chr12:39312161 0 dispersed
Bma12g00850 Bma-Chr12:39312161 Bma14g00963 Bma-Chr14:10979022 0 dispersed
Bma12g00850 Bma-Chr12:39312161 Bma05g00993 Bma-Chr5:48415383 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00954 . 186 1234 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1264.2
Bma14g01923 . 17 996 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1345.9
Bma04g00854 . 73 1029 Histidine Kinase Gene Family AT2G01830 52.9 9.1e-273 936.8
Bma02g01307 . 303 1275 Histidine Kinase Gene Family AT2G01830 51.4 5.5e-270 927.5
Bma01g00611 . 1 1119 Histidine Kinase Gene Family AT1G09570 76.7 0.0e+00 1754.2
Bma12g00850 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1253.4
Bma05g00993 CCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.8 0.0e+00 1171.0
Bma06g01466 CCT 29 1111 Histidine Kinase Gene Family AT1G09570 53.1 0.0e+00 1157.5
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT1G09570 51.1 4.8e-314 1073.9
Bma05g00993 CCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1629.4
Bma06g01466 CCT 30 1084 Histidine Kinase Gene Family AT2G18790 74.6 0.0e+00 1598.2
Bma01g01487 BCT 8 1043 Histidine Kinase Gene Family AT2G18790 62.5 0.0e+00 1290.4
Bma14g00963 BCT 1 1025 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1215.7
Bma12g00850 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1110.9
Bma01g00611 . 21 1055 Histidine Kinase Gene Family AT2G18790 51.2 8.4e-309 1056.6
Bma12g00850 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1401.0
Bma05g00993 CCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1116.7
Bma06g01466 CCT 21 1109 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1111.3
Bma01g00611 . 9 1114 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1097.8
Bma05g00993 CCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.4 0.0e+00 1654.8
Bma06g01466 CCT 30 1108 Histidine Kinase Gene Family AT4G16250 74.0 0.0e+00 1619.8
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT4G16250 60.8 0.0e+00 1318.5
Bma14g00963 BCT 15 1087 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1237.2
Bma12g00850 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1137.1
Bma01g01487 BCT 7 1106 Histidine Kinase Gene Family AT4G18130 64.5 0.0e+00 1409.8
Bma14g00963 BCT 19 1088 Histidine Kinase Gene Family AT4G18130 62.1 0.0e+00 1331.2
Bma05g00993 CCT 37 1119 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1250.3
Bma06g01466 CCT 38 1108 Histidine Kinase Gene Family AT4G18130 58.1 0.0e+00 1243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00850 Bma_Chr12 FPKM 5.274559 5.677901 9.059523 8.050213 32.506344 28.882271 32.503162 7.768378 8.705602 9.965022