Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00850 ATGTCGTCTAAGTCTACGAACAAGACGAACTGTTCAAGAAGCAGCTCTACCAGATCGAAACATGGATCTCGAGTGGTTACACAGACTCCCATTGACGCTAAACTCCATGTTGAATTCGAAGAGACTGAGCAGGGTTTTGATTACTCCACTTCCATTGACTTCAATCTCTCTTGCTCCACCAGCAATGTTCCATCGTCAACAGTTTCGGCTTACCTTCAAAAGATGCAGAGGGGAAAGCTGATTCAACCCTTTGGCTGTATGATTGCCGTTGATGAGGAGAAGTTTTCGGTTCTTGCATATAGCGAAAATGCCCCCGAAATGCTGGACTTGGCCCCACTCGCTGTTCCGAGCATTGAGCAGCAAGATGCTTTGACTTTCGGAACGGATGTTCGAACACTTTTTCAGACCTCGGGTGCTGCTGCCCTGCACAAAGCTAGCAAAATTAGGGAAGTCAACCTTCTAAATCCTATATTGCTTCACTGTAAAACTTCAGGAAAGCCCTTTTATGCAATTCTTCATCGCATTGATGTTGGTTTAGTCATAGATTTAGAACCTGTTAATCTAGCAGATGTACCGGTGACAGCTGCCGGGGCATTGAAATCGTATAAACTTGCTGCCAAAGCCATCTCAAGATTGCAGTCTCTACCAAGTAGGAATATATCTCTGCTGTGTGATGTGTTGGTCAAAGAAGTTAGTGATTTAACGGGGTATGATCGGGTTATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTTGTAGCTGAGTGCCACAGGCCCGATTTGGAACCTTATCTGGGTTTACATTACCCGGCTACAGATATACCTCAAGCCTCGAGATTTCTGTTTATGAAGAACAAAGTAAGGATGATATGTGATTGTTTGGCAACTCCAGTTAAAGTTATTCAAGACAGCAAATTGACTCAGCCATTGAGTCTTTGTGGATCGGTTCTGAGATCTCCTCACGGCTGTCATGGACAATATATGGCAAATATGGGTTCAATTGCATCCCTTGTTATGTCTGTAACGATCGACGAGGAGGATAATGAGGTAGAGAGCGATCAGCAGAAGGGAAGAAAATTGTGGGGCTTAGTGGTTTGTCATCACACGAGCCCTTGGTTTATCCCATTTCCTTTGCGATATGCCTGCGAGTTCTTGATTCAAGTTTTCAGTATTCAAATCAACAAAGAAGTTGAGCTGGCTGCTCAATTGAGGGAGAAGCATATTTTGCAAACTCAAACTGTTCTTTGCGATATGCTTCTTAGAGATGTCCCTGTGGGAATCGTTACACAATCACCAAATATAATGGATCTCGTCAATTGCGATGGAGCCGCTCTTTATTACAAGAAGAAATTCTGGGTGCTAGGAGTTACTCCGGCTGAAGCACAAATTAGAGATATAGCTGATTGGCTTCTTCAGAATCACAGCGGGAGCACTGGGCTGAGTACGGATAGTCTCATGGAAGCTGGCTACCCTGGAGCTTCTGGTCTCAGCAATGAGGTTTGCGGGATGGCTGCCATTAAAATCACAGGAAAGGATTTTCTCTTTTGGTTTCGATCCCACATGGCGAAGGAAATCAAGTGGGGCGGAGCAAAACACGATCCGAACGACAAGGACGATGGGCGGAAGATGCATCCCAGGTCGTCATTCAAGGCTTTCTTGGAGGTTGTGAAGCAGAGAAGTTTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCTTTACAGCTGATAATGCGAGGATCTCTACAGGACGAGATAGAGGACTACTCCAAAATAATTGTGAATGTTCCCTCAGCAGATGACACGTTACAAAGTTTGGATGAATTGCGGGTCGTAACGAATGAAATGGTCCGCCTTATCGAGACAGCTGCCGTCCCCATCTTGGCTGTTGATGCCTCGGGCATTATAAACGGGTGGAACATCAAAGCTAGTGAACTAACGGGAGTGCCAGTACAAGAAGCAATTGGTAGACTCTTTGTCGATGTTGTTGCTGATGAGTCAGTCGAGGTGGTGAAGAATATGCTTTCCTTGGCTCTGCAAGGCATAGAAGAACGAAATGTTGAAATTAAACTCAAAACATACGGGCCCCAGCAAAGAAATGGCTCGATTATTTTAGTAGTCAATGCTTGTTGTAGTCGAGATACGAAAGAAAATATCGTGGGGAGTTGCTTTATCGGACAAGATGTGACTGGACAGAGACTCATTATGGACCAATATACTCGTCTCCAAGGTGATTATAACGGAATTATGCAGAGCCCCTCTACACTTATTCCTCCGATTTTCATGACCGATGAGCATGGCCGATGCTCGGAATGGAACGATGCTATGCAAACATTATCTGGTTTGAAGAGAGAAGAAGCAATCGATAAGATGCTTCTTGGAGAGGTCTTCACCATCAATAGTGTCGGTTGTCGGGTCAAAGATCAAGACACATTGACAAAGCTTAAAATTTTGTTTAATAGGGTGGTTTCAAACCAGGATGTTGACAAATTGTTGTTCGGCTTTTTCGATAGGCAGAACAATTACGTTGAAGCTTTACTTTCTGCAGATAAAAGGGTCGATGCAGAGGGGAGAATGACGAGAGTTTTATGTTTTTTGCATGTGGCGAGTCTGGAACTTAAACATGCTATCCATATGCAGAAAATATCGGAACAGGCTGCGGATGATAGCGTCAAGAAGTTGACGTACCTTCGGAGGGAGATCAGAAAACCGCTCGGTGGGATTCAGTTTATGCAGAATCTCATGGGCTCTTCCGATATAAGCGCAGAGCAAAAGCAGCTACTCAAGATAAGCACATCCTGTCAGGATCAGTTGGTCAAGATTGTAGATGACACTGATATCGAAAATATCGATGAATGCTTTATGGAGATGAGCTCTGGTGAATTCAACCTGGGAGATGTTCTTGAGGTTGTCATGAATCAAGTCATGGTTTTAGGCCAAGAACGACGAATCCAGGTCATCCTCGATTCTCCTTCAGTTGCGTCATCGTTTCATTTGTATGGCGACAATTTGAGGCTTCAGCAGGTACTTTCAGATTTTTTGAGTAGCGCTGTCGTCTTTGTACCGACATCTGAAGGATCTTCAGTTTCCCTTCAAGTGATTCCGAAGAAAAAACATATCGGATCCAAAATGTGTATCATTCATCTCGAATTTAGGATCGTTCATCCATCGCCTGGAATTCCCGAGATTTTAATCCAAGAGATGTTTCATCACAACAATAACGTCTCAAAGGAAGGTCTTAGTCTATATATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACCGTACAATACCTAAGAGAAGCAGAGAGGTCATCCTTCATTATTATAGTCGAATTCCCACAAGTAAAAAAGATTGACAAATGA 3369 43.63 MSSKSTNKTNCSRSSSTRSKHGSRVVTQTPIDAKLHVEFEETEQGFDYSTSIDFNLSCSTSNVPSSTVSAYLQKMQRGKLIQPFGCMIAVDEEKFSVLAYSENAPEMLDLAPLAVPSIEQQDALTFGTDVRTLFQTSGAAALHKASKIREVNLLNPILLHCKTSGKPFYAILHRIDVGLVIDLEPVNLADVPVTAAGALKSYKLAAKAISRLQSLPSRNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAECHRPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQDSKLTQPLSLCGSVLRSPHGCHGQYMANMGSIASLVMSVTIDEEDNEVESDQQKGRKLWGLVVCHHTSPWFIPFPLRYACEFLIQVFSIQINKEVELAAQLREKHILQTQTVLCDMLLRDVPVGIVTQSPNIMDLVNCDGAALYYKKKFWVLGVTPAEAQIRDIADWLLQNHSGSTGLSTDSLMEAGYPGASGLSNEVCGMAAIKITGKDFLFWFRSHMAKEIKWGGAKHDPNDKDDGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLIMRGSLQDEIEDYSKIIVNVPSADDTLQSLDELRVVTNEMVRLIETAAVPILAVDASGIINGWNIKASELTGVPVQEAIGRLFVDVVADESVEVVKNMLSLALQGIEERNVEIKLKTYGPQQRNGSIILVVNACCSRDTKENIVGSCFIGQDVTGQRLIMDQYTRLQGDYNGIMQSPSTLIPPIFMTDEHGRCSEWNDAMQTLSGLKREEAIDKMLLGEVFTINSVGCRVKDQDTLTKLKILFNRVVSNQDVDKLLFGFFDRQNNYVEALLSADKRVDAEGRMTRVLCFLHVASLELKHAIHMQKISEQAADDSVKKLTYLRREIRKPLGGIQFMQNLMGSSDISAEQKQLLKISTSCQDQLVKIVDDTDIENIDECFMEMSSGEFNLGDVLEVVMNQVMVLGQERRIQVILDSPSVASSFHLYGDNLRLQQVLSDFLSSAVVFVPTSEGSSVSLQVIPKKKHIGSKMCIIHLEFRIVHPSPGIPEILIQEMFHHNNNVSKEGLSLYISQKLVKIMNGTVQYLREAERSSFIIIVEFPQVKKIDK 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39312161 39316402 + Bma008168.1 Bma12g00850 92276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Bma12g00850 1122 PANTHER PHYTOCHROME C 1 1117 - -
Bma12g00850 1122 Pfam GAF domain 220 398 IPR003018 GO:0005515
Bma12g00850 1122 SMART HKATPase_4 1002 1118 IPR003594 -
Bma12g00850 1122 PIRSF Phytochrome_conventional 2 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma12g00850 1122 SUPERFAMILY GAF domain-like 406 584 - -
Bma12g00850 1122 Gene3D - 200 559 IPR029016 -
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 806 IPR035965 -
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 724 IPR035965 -
Bma12g00850 1122 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Bma12g00850 1122 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Bma12g00850 1122 CDD HisKA 895 945 IPR003661 GO:0000155|GO:0007165
Bma12g00850 1122 Gene3D - 929 1110 IPR036890 -
Bma12g00850 1122 Gene3D PAS domain 755 868 - -
Bma12g00850 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Bma12g00850 1122 ProSiteProfiles Histidine kinase domain profile. 897 1118 IPR005467 -
Bma12g00850 1122 SMART pas_2 745 814 IPR000014 -
Bma12g00850 1122 SMART pas_2 615 681 IPR000014 -
Bma12g00850 1122 MobiDBLite consensus disorder prediction 1 26 - -
Bma12g00850 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 729 865 IPR035965 -
Bma12g00850 1122 Gene3D PAS domain 76 322 - -
Bma12g00850 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1111 IPR036890 -
Bma12g00850 1122 MobiDBLite consensus disorder prediction 1 27 - -
Bma12g00850 1122 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Bma12g00850 1122 Gene3D PAS domain 602 745 - -
Bma12g00850 1122 TIGRFAM sensory_box: PAS domain S-box protein 620 732 IPR000014 -
Bma12g00850 1122 CDD HATPase_Phy-like 1001 1114 IPR044767 -
Bma12g00850 1122 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bma12g00850 1122 Pfam PAS fold 746 868 IPR013767 GO:0006355
Bma12g00850 1122 Pfam PAS fold 616 730 IPR013767 GO:0006355
Bma12g00850 1122 CDD PAS 757 868 IPR000014 -
Bma12g00850 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1112 IPR003594 -
Bma12g00850 1122 Gene3D - 403 576 IPR043150 -
Bma12g00850 1122 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Bma12g00850 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1117 - -
Bma12g00850 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bma12g00850 1122 CDD PAS 624 730 IPR000014 -
Bma12g00850 1122 SUPERFAMILY GAF domain-like 199 395 - -
Bma12g00850 1122 SMART gaf_1 219 408 IPR003018 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00611 Bma-Chr1:5522148 Bma12g00850 Bma-Chr12:39312161 0 dispersed
Bma12g00850 Bma-Chr12:39312161 Bma14g00963 Bma-Chr14:10979022 0 dispersed
Bma12g00850 Bma-Chr12:39312161 Bma05g00993 Bma-Chr5:48415383 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00850 - - qsu:111989287 1800.02