Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00859 ATGGCTACCTCCGCAGTCCAGCAGTCGTCCTTCGCCGGCCAGACCGCCCTCAAGCAGTCCAATGAGCTCGTCCGCAAGGTCGGTGCCTCTAATGGCGGCCGCATTGCTATGCGCCGAACTGTGAAGAGTGCTCCTCAAAGTATCTGGTATGGTCCAGACCGTCCGAAATATTTGGGACCATTCTCCGAGCAAACCCCGTCGTACCTTACCGGCGAGTTCCCAGGAGACTACGGCTGGGACACAGCCGGATTATCGGCTGATCCCGAGACGTTCGCCAAGAACAGGGAGCTGGAAGTGATCCACAGCCGGTGGGCCATGCTTGGGGCTCTCGGATGTGTCTTCCCAGAGATTCTCTCAAAGAACGGCGTGACGTTCGGCGAGGCAGTGTGGTTCAAAGCCGGATCTCAAATCTTCTCCGAAGGTGGCTTGAACTATCTCGGCAACCCTAATTTGATTCACGCGCAGAGCATCCTTGCCATCTGGGCCAGTCAAGTTGTCCTAATGGGGCTAATCGAAGGATACAGAGTCGGAGGAGGACCTCTCGGCGAGGGACTCGACCCAATTTACCCAGGTGGATCATTCGACCCGCTTGGGTTGGCCGATGACCCCGAAGCCTTTGCAGAGTTGAAGGTGAAAGAGCTCAAAAACGGAAGGTTGGCAATGTTCTCCATGTTCGGATTCTTCGTTCAGGCAATCGTCACCGGAAAAGGCCCGATCGAGAACCTATCCGACCACCTCGCCGATCCCGTGGCCAACAACGCCTGGGCTTACGCCACTAACTTCGTCCCCGGCAAATGA 798 56.64 MATSAVQQSSFAGQTALKQSNELVRKVGASNGGRIAMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLNYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39396188 39397088 + Bma008177.1 Bma12g00859 92285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00859 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Bma12g00859 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Bma12g00859 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Bma12g00859 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Bma12g00859 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 265 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01306 Bma12g00859 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00859 Bma-Chr12:39396188 Bma14g00935 Bma-Chr14:10678062 1.42E-153 dispersed
Bma06g00979 Bma-Chr6:46356508 Bma12g00859 Bma-Chr12:39396188 1.52E-64 transposed
Bma14g00298 Bma-Chr14:3713353 Bma12g00859 Bma-Chr12:39396188 7.18E-128 transposed
Bma12g00859 Bma-Chr12:39396188 Bma02g01306 Bma-Chr2:55191335 0 wgd
Bma12g00859 Bma-Chr12:39396188 Bma02g01306 Bma-Chr2:55191335 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00859 K08913 - pop:7455996 519.62