Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00863 ATGGCTGCCAATATCAGTGGTGGAGCAATTTCTTATGGATTGGCTGGCAAGGCCCGGAAACAGATTGCAAATGCTGGAATTTTGAAGCCGCTTCCCTTCATACGGCCTAGGAAGGCCAGTAATTCTGTAGATAGTATTGACAAGAAGGGTTTAGGCTACTCTAATAGAATTTGGCACAACTATTTGTCTGCTAAACGTAGAACATCATTATCATCCGCTGTACCCAATCATCGGAATCACTGTTTTCTTGCAAGCTGTGGTAAGGTAAGTTCAGATTGCAATGTTGATTCCCCTGACGTGGATAGAAGATTAAAGTTAGATGAAGATCTTCCTGCTAGCAATGATGCCAATGGTGCTCTTAAGGTTAAAGAAATTTCCATCCATCAGAATCAATACGTGGGCGTCAGACAGGAGCTCTTGAATCTCTCATTACCTGCTATTGCTGGACAAGCACTAGACCCACTAGCACAACTGATGGAAACTGCTTATATTGGTAGATTGGGCCCGGTCGAGTTGGCTTCAGCAGGAATTTCCGTAAACATCTTTAACTACGTATCAAAACTATTTAATATTCCACTATTGAGTGTTGCCACATCTTTTGTTGCTGAAGACATTGCAAAGAATGCTAATGAAGACCCTTCATCAGGTTCTTCGAGTGAATATACCAATGGGAAACCTGGTGCTGGGGTATCTGATAGACGGCAGTTATCTTCGGTGTCTACAGCTTTACTATTGGCAGTCGGGATTGGCCTGTTTGAGGCGTTAGGATTATATCTTGGATCTGGATTATTCTTAGATGCTATGGGTATATCTTCAGAGTCATCCATGCGTATTCCAACGCAGAAATTACTTTTAGTTAGATCCCTTGGTGCTCCAGCTGTTGTTCTGTCTTTGGCTCTTCAAGGCATTTTTCGTGCAGGTATTGGTAATTTATTGGCTGCATGTATGTTTCCAATATCTATGTATTGTTTACAGTTGGGTGTTACTGGAGCAGCCATTTCCACTGTTGCATCTCAGTATGTAGTCACCATTTTAATGCTATGGTTTCTCAATAAGAGAGCAATACTACTGCCTCCAAAGATGGGAGCATTGCAGTTTGGTGTATATTTTAAATCTGGTGGTTTTCTTATCGGAAGAACTCTGGCTGTTTTAACAACAATGACACTGGGAACAAGAATGGCTGCTCGTCAAGGTGCTGTGGCAATGGCGGCACATCAAATATGCATGCAAGTGTGGTTAGCTGTCTCTCTCCTTACAGATGCACTGGCTGCTTCCGGTCAGGCCTTGATTGCAAGTTCTATGTCACGGGAAGACTACAGGAATGTGAAAAAAGTAACTGACTTTGTTTTGAAGATAGGAGTACTCACAGGCATTTCCTTGGCTGTGATTCTCGGTTTTTCTTTTAGCTCTTTGGCCACCTTGTTCACTAAGGATGCAGAAGTGCTAAAAATTGTTAGAACTGGGGTCTTATTCGTCAGTGCAAGTCAACCTCTCAATGCTCTTGCATATATTTTTGATGGCCTCCATTATGGTGTCTCTGACTTTTCTTATGCAGCTTACTCAATGATGACAATTGGGGCAATCTCTTCGACATTTTTGCTTTGTGTTCCATCAAATTTTGGACTTCCTGGTGTTTGGTTAGGCTTGACACTCTTCATGGGCTTGAGAATGGTAGCTGGTTACCTCAGATTACTTTCAAGGAATGGTCCATGGTGGTTCCTGCATAGCGAACTAAGGTTCTAG 1743 42.4 MAANISGGAISYGLAGKARKQIANAGILKPLPFIRPRKASNSVDSIDKKGLGYSNRIWHNYLSAKRRTSLSSAVPNHRNHCFLASCGKVSSDCNVDSPDVDRRLKLDEDLPASNDANGALKVKEISIHQNQYVGVRQELLNLSLPAIAGQALDPLAQLMETAYIGRLGPVELASAGISVNIFNYVSKLFNIPLLSVATSFVAEDIAKNANEDPSSGSSSEYTNGKPGAGVSDRRQLSSVSTALLLAVGIGLFEALGLYLGSGLFLDAMGISSESSMRIPTQKLLLVRSLGAPAVVLSLALQGIFRAGIGNLLAACMFPISMYCLQLGVTGAAISTVASQYVVTILMLWFLNKRAILLPPKMGALQFGVYFKSGGFLIGRTLAVLTTMTLGTRMAARQGAVAMAAHQICMQVWLAVSLLTDALAASGQALIASSMSREDYRNVKKVTDFVLKIGVLTGISLAVILGFSFSSLATLFTKDAEVLKIVRTGVLFVSASQPLNALAYIFDGLHYGVSDFSYAAYSMMTIGAISSTFLLCVPSNFGLPGVWLGLTLFMGLRMVAGYLRLLSRNGPWWFLHSELRF 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39564798 39569380 - Bma008183.1 Bma12g00863 92289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00863 580 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 81 577 IPR044644 -
Bma12g00863 580 Pfam MatE 385 523 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bma12g00863 580 MobiDBLite consensus disorder prediction 210 225 - -
Bma12g00863 580 MobiDBLite consensus disorder prediction 210 232 - -
Bma12g00863 580 CDD MATE_DinF_like 137 566 IPR044644 -
Bma12g00863 580 PANTHER PROTEIN DETOXIFICATION 81 577 - -
Bma12g00863 580 TIGRFAM matE: MATE efflux family protein 145 546 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00863 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - jre:109006641 673.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00845 Bma-Chr9:47469417 Bma12g00863 Bma-Chr12:39564798 7.09E-85 dispersed
Bma12g00541 Bma-Chr12:21663111 Bma12g00863 Bma-Chr12:39564798 5.07E-14 dispersed
Bma12g00542 Bma-Chr12:21825061 Bma12g00863 Bma-Chr12:39564798 2.20E-13 dispersed
Bma03g00570 Bma-Chr3:4742342 Bma12g00863 Bma-Chr12:39564798 2.08E-09 transposed
Bma14g01047 Bma-Chr14:12501584 Bma12g00863 Bma-Chr12:39564798 6.94E-125 transposed
Bma12g00863 Bma-Chr12:39564798 Bma12g00898 Bma-Chr12:40338099 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g236 . . Bda06g00459 . . . . Bma12g00863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car11g01408 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008463 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00863 Bma_Chr12 FPKM 0.878927 1.17172 4.880403 4.324569 1.2595 1.127756 1.458193 8.880382 9.933032 10.305615