Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00864 ATGTTGGCCTTCATCATCATCATCATCTTCTTTCCTTCCTCTGTCACCCAGTTAACTTCAGAGAGGCAAACAATGGCGCTAAGGGTGCCCACACAACTGATCACACCCGGCAAACTCCACCAACATCATCATCATTACCCTCTTTCATGGCGCCGTTCTTTTGCACCGGACGCTCTCTTTTCTTCTCTTCATTTGCCCACCGCTACCTCCTCTTCTTCTTCTTCATCCGGCAAGTTTTCTACGATTCCGCTTGTTACATGTACAGCTCAGGCGACTGGACCGATAAATCTAGCACCCGGAACTCCGGTGAGACCGACCAGCGTACTAATCGTCGGTGCCACCGGAACACTGGGACGGCAGATCGTTCGCCGTGCACTGGACGAAGGGTACGACGTCAGGTGTCTCGTTCGTCCTCGACCCTCTCCGGCCGATTTTCTCCGTGATTGGGGAGCCACAGTCGTCAACGCTGACCTGAGTAAACCAGAGACCATTCCTGCAACATTGGTGGGCATCCATACCATCATCGACTGCGCTACAGGCCGACCGGAAGAGCCAATCAAGACGGTAGATTGGGAAGGAAAAGTTGCTCTTATACAATGTGCCAAGGCAATGGGTATTCAGAAGTATGTTTTCTTTTCCATCCATAACTGTGACAAGCATCCTGAAGTTCCACTCATGGAGATCAAGTATTGCACCGAGAAGTTCCTCCGCGATTCTGGCCTAAAACACATCATTATTCGATTATGCGGCTTCATGCAGGGCCTTATTGGGCAGTATGCTGTACCTATACTGGAGGAAAAATCAGTTTGGGGTACAGATGCTCCCACTCGAATAGCTTACATGGACACTCAGGACATAGCTCGGTTGACATTCATAGGTTTACGCAATGAAAAACTCAACGGAAAGCTTCTCACTTTTGCTGGTCCACGAGCGTGGACAACCCAGGAGGTAAGCAACAACAGATTCTCTTGCATTGAAACCATGACATTTCAGAGTGATCCTTCAAGTTCTTCACCAATTTCTTATCTGAAAATTCCTTCTTTTAATTGGATTTAA 1056 48.3 MLAFIIIIIFFPSSVTQLTSERQTMALRVPTQLITPGKLHQHHHHYPLSWRRSFAPDALFSSLHLPTATSSSSSSSGKFSTIPLVTCTAQATGPINLAPGTPVRPTSVLIVGATGTLGRQIVRRALDEGYDVRCLVRPRPSPADFLRDWGATVVNADLSKPETIPATLVGIHTIIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFFSIHNCDKHPEVPLMEIKYCTEKFLRDSGLKHIIIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIGLRNEKLNGKLLTFAGPRAWTTQEVSNNRFSCIETMTFQSDPSSSSPISYLKIPSFNWI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39597324 39598962 + Bma008184.1 Bma12g00864 92290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00864 351 Pfam NmrA-like family 108 307 IPR008030 -
Bma12g00864 351 PANTHER - 46 318 IPR044256 -
Bma12g00864 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 108 317 IPR036291 -
Bma12g00864 351 Gene3D - 107 328 - -
Bma12g00864 351 CDD SDR_a5 108 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00864 - - - jre:109010200 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00864 Bma-Chr12:39597324 Bma12g00899 Bma-Chr12:40374055 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g241 . . . . . . . Bma12g00864 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00822 . . . . . . . . . . . Sed05g3473 . . . . . . . . Bhi10g01234 Tan05g1067 Cmetu11g0438 . Hepe08g0332 . . . . . . . . . . . . Cme11g01219
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009131 1 1 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00864 Bma_Chr12 FPKM 532.938477 554.222351 10.847155 10.531262 4.600197 3.916762 4.989631 0.534226 0.401267 0.265