Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00865 ATGGAGTGTAGCCTCAACCTCCATTGCTTTCACGCATGTGGCCATGGGAGGAAAGCTCGAATTTCGCTCTCTCCGTCAACCTTCTATCTTGATAAGTCTACCTTTTCAGTTCACCATACTCGGAAATTGCTGCTTTCTTCTGGGTTTTTCACAAAATCTACCACCCAATTATCTCCTAGTGTCTTGCTGTCTGGATATTCCACTTTGGAAGAGGGAGGAGGCATGCAGTTTATAGCAAGAGCATCTGTACAGCCACTGTCTGAAGAATTGACGGACGATAAGTCCAATGACCTCTTAGTAACAGGGGATTCGATTCGGCATCGATTTCTCAATTTTTATGCTTCTCGGGGACACAAAATTCTTCCAAGTGCTTCATTAGTGCCAGAGGATCCAACAGTTCTGTTGACAATTGCAGGAATGCTTCAATTTAAGCCTACATTCCTTGGAAATGTTCCTAGACAAGTACCTTGTGCTACAACTGCTCAAAGGTGCATACGAACTAATGATGTAGAGAATGTTGGTCGAACTGCCAGACATCATACATTTTTTGAGATGCTCGGAAATTTCAGCTTTGGTGATTACTTCAAGAAAGATGCAATTAAATGGGCATGGGAGCTGTCAACCATTGAATTTGGGCTGCCCGCTGACAGATTGTGGATTAGTGTTTATGAAGATGATGATGAAGCATTTGCAATTTGGCATGACGAGATAGGAGTTCCCATTGAATGTATAAAAAGGATGGGTGCGGATGATAACTTCTGGACAAGTGGAATAACTGGTCCTTGCGGTCCATGCTCAGAGATCTATTATGATTTTCATCCTGAAAGAGGATATTTAAATACTGATCTGGGGGATGATTCTAGGTTTATGGAGTTCTACAACTTAGTCTTCATGCAATACAACAAAAAAGAGGATGGTTCTCTTGAACCATTAAAACAAAAGAACATTGACACAGGACTTGGTTTAGAGCGTATGGCTCGTATTCTGCAGAAGGTTCCAAACAACTATGAGACGGACTTGATCTATCCCATTATACAGAAGACCTCGGAACTGGCAAATGTGCCATATGATAGAGCTGATGAAAAATTAAAAGTGAATCTTAAAATTATTGGAGATCATATGCGTGCAATTGTTTATCTCATATCTGATGGCGTAATCCCCTCAAACATTGGGAGAGGTTATGTAGTTCGACGACTTATTAGAAGAGTTGTACGTGCTGGTAGGTTGCTTGGTATAGAGGGGGATGGGCGGGGAAACCTTGATGGGGCGTTTACTCCAGCCATAGCACAAAAGGTTATAGAATTGAGCACTTATATTGATGGGGATGTTAAGGGTAGGAAAAATCGCATTGTAGAAGAATTGAAAAGGGAGGAACTCAGATTTGTACAGACTCTTGAGAGGGGGGAAAAACTGCTTGGACAAATGCTAGCCGATGCATTATCAAGTGCTAAAGAAAATGAAACTGTACCCTGTTTGTCTGGCAGAGATGCATTTCTTTTGTATGACACATATGGGTTTCCAGTGGAGATAACAACAGAAGTTGCCCAAGAACGTGGTGTAGGTATAGATATGAGTGGTTTTGATATTGAAATGGAAAATCAAAGGCGTCAATCTCAGGCTGCTCACAATGCTGTTAAACTTCAAGTGGGAGAAGGAATGTCAATCACTGAAAATATTCCTGATACTAAATTTCTTGGATATGATTCTCTTTCAGCCAGGGCTATTGTAGAGACTCTTCTGGTGAACGGAAATCCTGTGACGCATGTTTCTGAAGGAAGTGAAGTGGAAGTTTTGTTGGACAGGACTCCGTTCTATGCTGAATCTGGAGGTCAAATAGGAGATCATGGTGTTCTATATATGGCAGAAGCGGAAAACAAGCAGAGAGCTGTTGTTAAGATAAATGATGTCCAAAAATCTTTTGGCAATATATATGTTCACAAGGGTACTATCAAAGAAGGAGTTCTGGAGGTTGGCAGGGAAGTAGAAGCAGCAGTTGACCCGAAATTGAGACAGGGAGCGACGGTCCATCACACTGCCACTCATTTGCTACAAGCTGCACTTAAGAAGATTGTGGGACAGGAAACATCTCAAGCTGGCTCATTGGTGGCCTTTGATCGCCTTAGATTTGACTTTAATTATCATCGACCCCTAAGCGACCCTGAACTGGCACATATTGAAGAACTTGTCAATGGATGGATTGGGGATGCAACACTTCTCCAGACTAAAGTGATGCCTCTTGTTGATGCGAAAAGTGCTGGTGCTCTAGCAATGTTTGGAGAAAAGTATGGAGAAGAGGTACGCGTTGTAGAGGTCCCAGGTGTATCTATGGAACTTTGCGGGGGGACTCATGTCTATAATACTTCTGAAATACGTGGCTTCAAAATAATCTCTGAGCAGGGCATTGCATCAGGTGTTAGACGTATAGAAGCTGTGGCCGGTGATGCTTTCATCGAATACGTCAGCTCCAGAGATCGCTATATGAGACTTTTGTGCTCCATGCTTAAAGTCAAAGCCGAAGAAGTAACATCTAGGGTAGAAAATCTCTTAGAGGAGTTAAGGATGGCAAGAAACGAAGTTTCTTCTTTGCGTGAAAAGGCAGCGGTTTCCAAGGCTTCAATTCTCGCAAGCAAAGCCTTCACAGTTGGTTCTAAGAATGAGATCAGGGTACTAGTGGAGTCCATGGGTGACGCTGATGCTGCTTCGCTAAAAGGTGCAGGGGAGTTTCTGATCGAGACGCTGCAAGATCCAGCTGCCATAATATTGGGTTCCTGTCCTGGTGAAGGAAAAGTCAGTTTAGTCGCTGCTTTTACTCCATCAGTTGTTAATCTTGGTATAGAGGCGGGGAAGTTTATTGGTCCAATAGCTAAGTTGTGTGGTGGAGGAGGAGGTGGCAGGCCAAATTTTGCTCAGGCAGGTGGAAAGAAACCTGAGAATTTGTCAAGTGCACTTGAGAAAGCACAATCTGAGATCATCAGAATCTTATCTGAAAAGCAAGCAAAGTCTTCTAAATGA 3012 42.76 MECSLNLHCFHACGHGRKARISLSPSTFYLDKSTFSVHHTRKLLLSSGFFTKSTTQLSPSVLLSGYSTLEEGGGMQFIARASVQPLSEELTDDKSNDLLVTGDSIRHRFLNFYASRGHKILPSASLVPEDPTVLLTIAGMLQFKPTFLGNVPRQVPCATTAQRCIRTNDVENVGRTARHHTFFEMLGNFSFGDYFKKDAIKWAWELSTIEFGLPADRLWISVYEDDDEAFAIWHDEIGVPIECIKRMGADDNFWTSGITGPCGPCSEIYYDFHPERGYLNTDLGDDSRFMEFYNLVFMQYNKKEDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIYPIIQKTSELANVPYDRADEKLKVNLKIIGDHMRAIVYLISDGVIPSNIGRGYVVRRLIRRVVRAGRLLGIEGDGRGNLDGAFTPAIAQKVIELSTYIDGDVKGRKNRIVEELKREELRFVQTLERGEKLLGQMLADALSSAKENETVPCLSGRDAFLLYDTYGFPVEITTEVAQERGVGIDMSGFDIEMENQRRQSQAAHNAVKLQVGEGMSITENIPDTKFLGYDSLSARAIVETLLVNGNPVTHVSEGSEVEVLLDRTPFYAESGGQIGDHGVLYMAEAENKQRAVVKINDVQKSFGNIYVHKGTIKEGVLEVGREVEAAVDPKLRQGATVHHTATHLLQAALKKIVGQETSQAGSLVAFDRLRFDFNYHRPLSDPELAHIEELVNGWIGDATLLQTKVMPLVDAKSAGALAMFGEKYGEEVRVVEVPGVSMELCGGTHVYNTSEIRGFKIISEQGIASGVRRIEAVAGDAFIEYVSSRDRYMRLLCSMLKVKAEEVTSRVENLLEELRMARNEVSSLREKAAVSKASILASKAFTVGSKNEIRVLVESMGDADAASLKGAGEFLIETLQDPAAIILGSCPGEGKVSLVAAFTPSVVNLGIEAGKFIGPIAKLCGGGGGGRPNFAQAGGKKPENLSSALEKAQSEIIRILSEKQAKSSK 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39604340 39611117 - Bma008185.1 Bma12g00865 92291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00865 1003 Gene3D - 676 811 - -
Bma12g00865 1003 Pfam DHHA1 domain 845 989 IPR003156 GO:0003676
Bma12g00865 1003 Gene3D - 737 790 - -
Bma12g00865 1003 Gene3D - 813 875 - -
Bma12g00865 1003 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 100 822 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Bma12g00865 1003 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 337 566 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Bma12g00865 1003 Coils Coil 831 865 - -
Bma12g00865 1003 SMART tRNA_SAD_4 766 809 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bma12g00865 1003 SUPERFAMILY Translation proteins 560 665 IPR009000 -
Bma12g00865 1003 PANTHER ALANYL-TRNA SYNTHETASE 101 989 - -
Bma12g00865 1003 CDD AlaRS_core 103 332 - -
Bma12g00865 1003 Pfam tRNA synthetases class II (A) 105 668 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Bma12g00865 1003 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 101 989 - -
Bma12g00865 1003 PRINTS Alanyl-tRNA synthetase signature 168 179 IPR002318 GO:0000166|GO:0005737
Bma12g00865 1003 PRINTS Alanyl-tRNA synthetase signature 392 405 IPR002318 GO:0000166|GO:0005737
Bma12g00865 1003 PRINTS Alanyl-tRNA synthetase signature 317 330 IPR002318 GO:0000166|GO:0005737
Bma12g00865 1003 PRINTS Alanyl-tRNA synthetase signature 290 301 IPR002318 GO:0000166|GO:0005737
Bma12g00865 1003 PRINTS Alanyl-tRNA synthetase signature 368 384 IPR002318 GO:0000166|GO:0005737
Bma12g00865 1003 Gene3D - 883 990 - -
Bma12g00865 1003 SUPERFAMILY ThrRS/AlaRS common domain 665 821 IPR018163 GO:0000166
Bma12g00865 1003 Gene3D Bira Bifunctional Protein; Domain 2 100 333 IPR045864 -
Bma12g00865 1003 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 766 809 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bma12g00865 1003 Gene3D - 552 665 - -
Bma12g00865 1003 Hamap Probable alanine--tRNA ligase, chloroplastic. 92 996 IPR027522 GO:0009507
Bma12g00865 1003 TIGRFAM alaS: alanine--tRNA ligase 105 973 IPR002318 GO:0000166|GO:0005737
Bma12g00865 1003 Hamap Alanine--tRNA ligase [alaS]. 101 994 IPR023033 GO:0004813
Bma12g00865 1003 SUPERFAMILY Class II aaRS and biotin synthetases 101 336 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00865 K01872 AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7] - zju:107427325 1528.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00927 Bma-Chr10:18976957 Bma12g00865 Bma-Chr12:39604340 4.10E-125 dispersed
Bma12g00865 Bma-Chr12:39604340 Bma13g00111 Bma-Chr13:1148460 2.51E-129 dispersed
Bma15g00478 Bma-Chr15:5501404 Bma12g00865 Bma-Chr12:39604340 2.22E-09 transposed
Bma12g00865 Bma-Chr12:39604340 Bma12g00905 Bma-Chr12:40461933 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g254 . . . . . . . Bma12g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0645 . . . . . . . . Bhi10g01224 Tan05g1079 Cmetu11g1332 . Hepe08g0326 . . . . . . . . . . . . Cme11g01236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006559 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00865 Bma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.145183 0.0 0.0 0.0 0.0 0.0