Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00866 ATGGCTAGTGTTTCTTCTGATGATGATGGCTCCGATCACCAGAGCTATCGGTGCGGTAGTTACAGTCTCAGTGCCGATGTGAGCGAGTCCGAGAGCTGCAGTAGCTTCTCGTGTCGCCGCTTTGACGGAGAAGGAGCTTTGACCTCTTTGACTTCATCTCCAAGGCCTGTCGCCGAGAATTTTTGTTTTCCGGCGCAGGCAATGCTGCCGGTGGTTGGTGGAAAGGATGTCGTCGCCTGGGACGAAAAGCGTGAGAGGCGAGATGCTGATTTGACTGAAATAGAGATGATGAAGGAGAGGTTTTCCAAACTTCTCCTCGGTGAAGACATGTCCGGAGGAGGGAAAGGAGTGTGCACTGCTCTTGCCATCTCAAATGCCATAACTAATCTCTCAGCTACTGTGTTTGGGGACCTGTGGAGATTAGGGCCAATTGCGCCACGAAAGAAGGCAATGTGGCACCGAGAAATGGAGTATCTCTTATCCATTAGTGACTTCATTGTGGAGCTTGTACCCTCAATTCAACAGTTTCCTGGCGGGGGTACCTATGAAATTATGGCAACTCAGCCTCGCTCAGACTTGTACTTGAATCTACCTGCTCTGAAGAAGCTCGATGCATTGCTTCTTAGTATGCTTGATGGATTTTGCAACACTGAGTTCGTTTATGTAGATAGCGGGATAGGTCGTGGTGGTTCTAATGGAGATAAAAATTTTATGCTTGGTGGAAGGCTATCTGTCAGACAAGAAGAGAAGTGGTGGCTACCTCATCCAAAAGTTCCCCCAGATGGGTTGTCAGAAAATACGAGGAACAGGCTTCAGCAGTGCAGGGACTGTGCGAATCAGATTTGGAAAGCGGCTATGGCAATCAATAGTAATGTTCTTGCTGAGATGGAGACTCCGAAAGTCTACTTAGAAAACTTGCCTAAGAGCGGGAGAGCTTGCTTAGGAGATATCATGTATCGCCATATAAAAGCAGCAAAGTTCTCTCCAGAGTATCTTCTGGATTGTCTAGACCTTTCATCTGAGCATCATGCTTTAGATATAGCCAATATGATCGAAGAATCGATCCATGTGTGGAAGCAAAAAGATGTGAAGAAAGTTGACAATAAAATTAAGGAAAGAACGCAATCTTGGGGTGGTAAGGTCAAGGGGCTTGTTACTGACTGGAGCAAGAATATTTGCCTGGTTCAAAGGGCGGAGGCTCTGTTTCATTGCCTGAGACTTCGATTTCCTGCGCTTCCACAAACTGCATTAGATATGACCAAGATCCAATATAATAAAGATGTAGGGCAGTCAATCTTGGAGAGCTACTCTAGAGTGATGGAGAGCTTGGCATTTAACATAATGGCAAGGATTGACGATGTCTTATACGTAGACGATGCAACGAAGAGGTGTGCTGAAGCAGAGTTGATCTCTCTTTTCAATAGAGGAGGTTTGGACGGTCATCCTATTCAGAAGCGTCTTTCTCCAAGTCCATTCTCAATTCAACACACCCCATATGCTACCCCATTTGCCACCCCAACTTTCTGTTCTTCAACCCCAGCAATTGGTACCCCTGGACGAGTTCCCTCCTCAAAAAACCGAGTAAAGGAGGGGGCTGATTCTGAAAAGTACTATTGGTCGCATGCTGAGAATCTCAGTGGAAGAAGAATTTCAGGGATAACTCCTGGGATATGA 1674 46.24 MASVSSDDDGSDHQSYRCGSYSLSADVSESESCSSFSCRRFDGEGALTSLTSSPRPVAENFCFPAQAMLPVVGGKDVVAWDEKRERRDADLTEIEMMKERFSKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGDLWRLGPIAPRKKAMWHREMEYLLSISDFIVELVPSIQQFPGGGTYEIMATQPRSDLYLNLPALKKLDALLLSMLDGFCNTEFVYVDSGIGRGGSNGDKNFMLGGRLSVRQEEKWWLPHPKVPPDGLSENTRNRLQQCRDCANQIWKAAMAINSNVLAEMETPKVYLENLPKSGRACLGDIMYRHIKAAKFSPEYLLDCLDLSSEHHALDIANMIEESIHVWKQKDVKKVDNKIKERTQSWGGKVKGLVTDWSKNICLVQRAEALFHCLRLRFPALPQTALDMTKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDATKRCAEAELISLFNRGGLDGHPIQKRLSPSPFSIQHTPYATPFATPTFCSSTPAIGTPGRVPSSKNRVKEGADSEKYYWSHAENLSGRRISGITPGI 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39624347 39626669 + Bma008187.1 Bma12g00866 92292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00866 557 Gene3D PRONE domain, subdomain 1 324 467 - -
Bma12g00866 557 Gene3D PRONE domain, subdomain 1 84 323 - -
Bma12g00866 557 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 2 530 - -
Bma12g00866 557 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 93 462 IPR005512 GO:0005085
Bma12g00866 557 ProSiteProfiles PRONE domain profile. 84 468 IPR005512 GO:0005085
Bma12g00866 557 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 2 530 IPR038937 GO:0005085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00866 - - - fve:101291583 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00709 Bma-Chr2:29671811 Bma12g00866 Bma-Chr12:39624347 0 dispersed
Bma08g00737 Bma-Chr8:43304231 Bma12g00866 Bma-Chr12:39624347 0 dispersed
Bma08g01098 Bma-Chr8:49984007 Bma12g00866 Bma-Chr12:39624347 2.11E-152 dispersed
Bma12g00866 Bma-Chr12:39624347 Bma10g00777 Bma-Chr10:12506102 1.07E-123 dispersed
Bma01g02390 Bma-Chr1:81482670 Bma12g00866 Bma-Chr12:39624347 0 transposed
Bma12g00866 Bma-Chr12:39624347 Bma12g00907 Bma-Chr12:40512069 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g274 . . . . . . . Bma12g00866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi10g01221 Tan05g1085 . . . . . Cla02g01079 Cam02g1159 Cec02g1157 Cco02g1205 Clacu02g1150 Cmu02g1112 Cre02g1415 . . . Cme11g01244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000066 11 10 10 15 11 8 15 8 8 9 8 8 14 8 8 15 8 15 12 8 8 8 7 8 9 7 8 16 13 6 299
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00866 Bma_Chr12 FPKM 0.0 0.0 29.134453 27.347773 7.136293 5.612389 5.204087 0.0 0.0 0.0