Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00872 ATGGGTCTCTCGAGCCTTCCGACTCCATCCGAGGGAATACTTTCTGTATTGGTACAAACAGCATTATCCATTTCCTTCTTCAAAAGCATAGTTGGATCGATTCTCCATGTCATCAGCACTGGCATCTTGTCATCATCCTCTTCACATTTGCCAGCAGACTCTGTCGAAATTTCTGCAGACTACCTCGATTTTCATCTAGGTTATTCCGAGACATATGCAGAGGAATTCCGAAGGAGGGTGCCCACCATTCGATTCGACAAAGCATGCAACAGTTGGCAGCCTGAGCTGAACTGCACGGTTTGCTTGACTCAATTTGAGCCTGAATCAGAGATTAACCTGTTATCTTGTGGCCATATTTTTCACAAAGTGTGCTTGGAGAAGTGGCTAGACTACTGGAATGTCACATGCCCAATGTGTAGGACTCCATTAATGCCAGAAGAAGAGAGAGTTAGGTAA 456 44.96 MGLSSLPTPSEGILSVLVQTALSISFFKSIVGSILHVISTGILSSSSSHLPADSVEISADYLDFHLGYSETYAEEFRRRVPTIRFDKACNSWQPELNCTVCLTQFEPESEINLLSCGHIFHKVCLEKWLDYWNVTCPMCRTPLMPEEERVR 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39798997 39799452 - Bma008194.1 Bma12g00872 92298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00872 151 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Bma12g00872 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 148 - -
Bma12g00872 151 Pfam Ring finger domain 97 140 IPR001841 -
Bma12g00872 151 SUPERFAMILY RING/U-box 91 145 - -
Bma12g00872 151 SMART ring_2 98 139 IPR001841 -
Bma12g00872 151 PANTHER - 1 148 IPR044249 -
Bma12g00872 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 145 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00660 Bma12g00872 CCT
Bma02g01295 Bma12g00872 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01093 Bma-Chr6:47744846 Bma12g00872 Bma-Chr12:39798997 9.75E-15 dispersed
Bma12g00872 Bma-Chr12:39798997 Bma05g01183 Bma-Chr5:50957905 4.96E-16 dispersed
Bma12g00872 Bma-Chr12:39798997 Bma02g01295 Bma-Chr2:55130209 2.82E-47 wgd
Bma12g00872 Bma-Chr12:39798997 Bma03g00660 Bma-Chr3:5401017 1.62E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00872 K16285 - tcc:18612514 198.364