Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00873 ATGGGTTATATATGTGATTTTTGCGGAGAGCAAAGGTCGATGGTTTATTGCCGTTCCGATGCTGCCTCTTTATGTTTATCGTGTGATCGAAGTGTCCATTCTGCTAATGCCTTGTCAAAGCGCCACTCAAGAGCACTCCTATGTGAAAAGTGCAACTCTCAGCCTGCAGTAGTAAGATGTGTTGAAGAGAAGATTTCCCTTTGCCAAAATTGTGATTGGACTGGCCACAGCCCATCTACCTCTTCCGATTCGCACAAAAGGCAGACCATAAATTGTTATTCTGGCTGCCCATCTGCTGCTGAACTTTCTTGTATATGGGCTTTTGTTTTGGATCTTCCTGCTGCCGAGGGTGATGCTTGCGAAAAAGAATTAGGATTGATGAGTATTACCGACGAAAGTACAAAGAATGGTTGGGGCAATTATAACAATGATATTGGTCAAAAAGCATCTAATTCGGTCGAGTGCAAATCATCTGGTTTGGAAGCTTCCTCTCTGATACCTGAGCTTGGCTCTATGCCTCATCTTCTAAACGTGCCTGCCGGATCTTCTAATATAACTTTGCCCAAGTTGTACTGTCCTGGAACAAAAGATACCGGTCGTTTCTGCGAAGGTGATGTCCTTGCTGACGACGATTTCAATATGGACGAACTTGATTTTGATATTGAAAACTACGACGAATTATTTCGAGTAGCTCTAAATCACTCTGAGGAGCTTTTTGAGAATGGTGGGATTGCTAGTTTGTTTGGGGCGAAGGATATGTCGGTTGCTGACTCTAGTTGCCGGGGTGAAGTCGCTGCTGAGGGTTCATCAGCTGGATGTGTTGATACTGTACAGCCAGCGTGTAGTACAGCAGCATCTGTCGATTCTATGATGAGTGCTAAAACAGACTCGATTCTTTACTTTAACGCAAGACAAGCACATTCGGGTCTGCCACTTTCTGGCCTCGCCATAGAGAGTAGCGTGGAAGATTGGGGAGCTTCATCAGTGCCTGCAATGGGAGAGCCTAGATGGTGCCCCCCATGCGCTGAGAGTTCCATCCAATCGACTAATCGTAGTAATGCTGTCCTGCGGTATCAAAAGAAGAAGAAGGATCGCAAGTTTGAGAAAAGAGTGAGGTATGCTTCTCGGAAAGCAAGGGCAGACGTAAGAAGGCGTGTGAAGGGACGGTTTGTCAAAGCTGGAGATGCTTATGACTATGACCCATTGAGCCAAACCAGAAGCTACTGA 1227 45.64 MGYICDFCGEQRSMVYCRSDAASLCLSCDRSVHSANALSKRHSRALLCEKCNSQPAVVRCVEEKISLCQNCDWTGHSPSTSSDSHKRQTINCYSGCPSAAELSCIWAFVLDLPAAEGDACEKELGLMSITDESTKNGWGNYNNDIGQKASNSVECKSSGLEASSLIPELGSMPHLLNVPAGSSNITLPKLYCPGTKDTGRFCEGDVLADDDFNMDELDFDIENYDELFRVALNHSEELFENGGIASLFGAKDMSVADSSCRGEVAAEGSSAGCVDTVQPACSTAASVDSMMSAKTDSILYFNARQAHSGLPLSGLAIESSVEDWGASSVPAMGEPRWCPPCAESSIQSTNRSNAVLRYQKKKKDRKFEKRVRYASRKARADVRRRVKGRFVKAGDAYDYDPLSQTRSY 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39803012 39804945 - Bma008195.2 Bma12g00873 92299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00873 408 CDD Bbox1_BBX-like 4 47 - -
Bma12g00873 408 SMART bboxneu5 48 90 IPR000315 GO:0008270
Bma12g00873 408 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma12g00873 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma12g00873 408 Pfam CCT motif 351 393 IPR010402 GO:0005515
Bma12g00873 408 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bma12g00873 408 CDD Bbox1_BBX-like 47 90 - -
Bma12g00873 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515
Bma12g00873 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Bma12g00873 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00873 - - - jre:109000761 558.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00658 Bma12g00873 CCT
Bma08g00690 Bma12g00873 CCT
Bma02g01294 Bma12g00873 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01335 Bma-Chr2:55845403 Bma12g00873 Bma-Chr12:39803012 8.73E-55 dispersed
Bma06g01334 Bma-Chr6:50294261 Bma12g00873 Bma-Chr12:39803012 1.52E-08 dispersed
Bma10g01045 Bma-Chr10:28619542 Bma12g00873 Bma-Chr12:39803012 3.04E-26 dispersed
Bma12g00873 Bma-Chr12:39803012 Bma15g00012 Bma-Chr15:172318 3.70E-29 dispersed
Bma12g00873 Bma-Chr12:39803012 Bma02g01294 Bma-Chr2:55121467 0 wgd
Bma12g00873 Bma-Chr12:39803012 Bma03g00658 Bma-Chr3:5393850 8.35E-32 wgd
Bma12g00873 Bma-Chr12:39803012 Bma08g00690 Bma-Chr8:42107098 1.04E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00460 . 24 395 C2C2-CO-like Transcription Factor Family AT5G15850 52.3 2.0e-59 226.5
Bma02g00460 . 12 395 C2C2-CO-like Transcription Factor Family AT3G02380 53.2 7.5e-67 251.1
Bma01g01259 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 52.7 1.1e-60 230.7
Bma06g00924 BCT 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma06g00932 . 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 4.6e-78 288.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.3e-77 287.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00543 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 57.5 2.4e-54 209.5
Bma15g00960 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 6.9e-53 203.8
Bma06g00103 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT2G21320 59.6 1.2e-49 193.0
Bma15g00960 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 61.6 4.6e-55 211.1
Bma06g00103 CCT,ECH 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 80.7 2.2e-49 192.2
Bma12g00543 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 1.2e-55 213.4
Bma05g00152 BCT 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 6.1e-47 184.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58146 PF06203 CCT 3.20E-14 CL0281 Bma TF