Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00873 ATGGGTTATATATGTGATTTTTGCGGAGAGCAAAGGTCGATGGTTTATTGCCGTTCCGATGCTGCCTCTTTATGTTTATCGTGTGATCGAAGTGTCCATTCTGCTAATGCCTTGTCAAAGCGCCACTCAAGAGCACTCCTATGTGAAAAGTGCAACTCTCAGCCTGCAGTAGTAAGATGTGTTGAAGAGAAGATTTCCCTTTGCCAAAATTGTGATTGGACTGGCCACAGCCCATCTACCTCTTCCGATTCGCACAAAAGGCAGACCATAAATTGTTATTCTGGCTGCCCATCTGCTGCTGAACTTTCTTGTATATGGGCTTTTGTTTTGGATCTTCCTGCTGCCGAGGGTGATGCTTGCGAAAAAGAATTAGGATTGATGAGTATTACCGACGAAAGTACAAAGAATGGTTGGGGCAATTATAACAATGATATTGGTCAAAAAGCATCTAATTCGGTCGAGTGCAAATCATCTGGTTTGGAAGCTTCCTCTCTGATACCTGAGCTTGGCTCTATGCCTCATCTTCTAAACGTGCCTGCCGGATCTTCTAATATAACTTTGCCCAAGTTGTACTGTCCTGGAACAAAAGATACCGGTCGTTTCTGCGAAGGTGATGTCCTTGCTGACGACGATTTCAATATGGACGAACTTGATTTTGATATTGAAAACTACGACGAATTATTTCGAGTAGCTCTAAATCACTCTGAGGAGCTTTTTGAGAATGGTGGGATTGCTAGTTTGTTTGGGGCGAAGGATATGTCGGTTGCTGACTCTAGTTGCCGGGGTGAAGTCGCTGCTGAGGGTTCATCAGCTGGATGTGTTGATACTGTACAGCCAGCGTGTAGTACAGCAGCATCTGTCGATTCTATGATGAGTGCTAAAACAGACTCGATTCTTTACTTTAACGCAAGACAAGCACATTCGGGTCTGCCACTTTCTGGCCTCGCCATAGAGAGTAGCGTGGAAGATTGGGGAGCTTCATCAGTGCCTGCAATGGGAGAGCCTAGATGGTGCCCCCCATGCGCTGAGAGTTCCATCCAATCGACTAATCGTAGTAATGCTGTCCTGCGGTATCAAAAGAAGAAGAAGGATCGCAAGTTTGAGAAAAGAGTGAGGTATGCTTCTCGGAAAGCAAGGGCAGACGTAAGAAGGCGTGTGAAGGGACGGTTTGTCAAAGCTGGAGATGCTTATGACTATGACCCATTGAGCCAAACCAGAAGCTACTGA 1227 45.64 MGYICDFCGEQRSMVYCRSDAASLCLSCDRSVHSANALSKRHSRALLCEKCNSQPAVVRCVEEKISLCQNCDWTGHSPSTSSDSHKRQTINCYSGCPSAAELSCIWAFVLDLPAAEGDACEKELGLMSITDESTKNGWGNYNNDIGQKASNSVECKSSGLEASSLIPELGSMPHLLNVPAGSSNITLPKLYCPGTKDTGRFCEGDVLADDDFNMDELDFDIENYDELFRVALNHSEELFENGGIASLFGAKDMSVADSSCRGEVAAEGSSAGCVDTVQPACSTAASVDSMMSAKTDSILYFNARQAHSGLPLSGLAIESSVEDWGASSVPAMGEPRWCPPCAESSIQSTNRSNAVLRYQKKKKDRKFEKRVRYASRKARADVRRRVKGRFVKAGDAYDYDPLSQTRSY 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39803012 39804945 - Bma008195.2 Bma12g00873 92299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00873 408 CDD Bbox1_BBX-like 4 47 - -
Bma12g00873 408 SMART bboxneu5 48 90 IPR000315 GO:0008270
Bma12g00873 408 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma12g00873 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma12g00873 408 Pfam CCT motif 351 393 IPR010402 GO:0005515
Bma12g00873 408 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bma12g00873 408 CDD Bbox1_BBX-like 47 90 - -
Bma12g00873 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515
Bma12g00873 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Bma12g00873 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00658 Bma12g00873 CCT
Bma08g00690 Bma12g00873 CCT
Bma02g01294 Bma12g00873 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01335 Bma-Chr2:55845403 Bma12g00873 Bma-Chr12:39803012 8.73E-55 dispersed
Bma06g01334 Bma-Chr6:50294261 Bma12g00873 Bma-Chr12:39803012 1.52E-08 dispersed
Bma10g01045 Bma-Chr10:28619542 Bma12g00873 Bma-Chr12:39803012 3.04E-26 dispersed
Bma12g00873 Bma-Chr12:39803012 Bma15g00012 Bma-Chr15:172318 3.70E-29 dispersed
Bma12g00873 Bma-Chr12:39803012 Bma02g01294 Bma-Chr2:55121467 0 wgd
Bma12g00873 Bma-Chr12:39803012 Bma03g00658 Bma-Chr3:5393850 8.35E-32 wgd
Bma12g00873 Bma-Chr12:39803012 Bma08g00690 Bma-Chr8:42107098 1.04E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58146 PF06203 CCT 3.20E-14 CL0281 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00873 - - jre:109000761 558.525