Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00878 ATGAACTCCAATCTCAACTCCGCCGCCGCCGGTTTCACCTCCCATTTCCCCTTTAACGCTGTCTCTGGGACCAACTTCGATGGTGGGGCTTCTTTGGAAGCTCCTACTGCTCCTGCTTTCAAACGCCGCCACCAGAATCCTCGGCGGAAGCGGTCAAAAATGGTCAGAATCGACGATGATCCGGCGGCTGTTTCCAGTTCTAGCAGCTTTCCGAGGCCGAAATACGTGAAAAAACCAGACCCAAATGCACCTAAAATTACCCGACCTTGTACCGAATGTGGGAAAAGGTTTTGGTCGTGGAAAGCGCTTTTTGGCCACATGAGGTGCCATCCTGAACGCCAGTGGCGAGGTATAAACCCACCGCCGAATCTCCGTTCACCTAATGTCTTCTCCGTCAGCGATTTCGAATTGGAAATGACAGAAGAAGATAATGAGGTCGCAGAATGTTTGATGATGCTAGCAACTACCCCAACCCCCATTGACGATCGAACTCAAAGCTTTACTTCCACAAGCTATGGAGAATTTCATCCTTCTGATAGTTTCCCGGTAGACGAACCGCCGGTGATCAGAGACTCCGAATGCGCGGGTCCGTCCTGGCGATCGTTCGAGTGCTCGAGTTGCAAGAAAGTGTTCGGGTCCCACCAGGCGCTGGGCGGCCATAGAGCGACTCACAAAAACGTGAAAGGCTGCTTCGCCATTACGAGAAACGGTTCAGAGGTTGAAGACGATCAGGTGGGAGAGCGAGAAAGGGAGAGTAACGCGGAGGAGAAGATGGCGATGGTATTGGGCGGCGCAGAAGGACACAGGTGCAGCATTTGCATGAGGGTTTTCTCAAGCGGACAAGCTCTAGGTGGGCACAAGAGGTGCCACTGGGAGAAAGGGGAGGATCAGCCATTGCTGAGCCCTTATGTTTCTTCTTCAATAAGGGAAGGTTGCAATAATCTGGACTTAAATTTGCCTCCGCCATTGGAGGAAGATTACTCCTCCTCTTCATATTCTTCCAACCTCACTCTAGATCTAAGGTTGACTCTTTGA 1035 51.4 MNSNLNSAAAGFTSHFPFNAVSGTNFDGGASLEAPTAPAFKRRHQNPRRKRSKMVRIDDDPAAVSSSSSFPRPKYVKKPDPNAPKITRPCTECGKRFWSWKALFGHMRCHPERQWRGINPPPNLRSPNVFSVSDFELEMTEEDNEVAECLMMLATTPTPIDDRTQSFTSTSYGEFHPSDSFPVDEPPVIRDSECAGPSWRSFECSSCKKVFGSHQALGGHRATHKNVKGCFAITRNGSEVEDDQVGERERESNAEEKMAMVLGGAEGHRCSICMRVFSSGQALGGHKRCHWEKGEDQPLLSPYVSSSIREGCNNLDLNLPPPLEEDYSSSSYSSNLTLDLRLTL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39990988 39992022 + Bma008202.1 Bma12g00878 92304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00878 344 ProSitePatterns Zinc finger C2H2 type domain signature. 270 290 IPR013087 -
Bma12g00878 344 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Bma12g00878 344 SMART c2h2final6 202 224 IPR013087 -
Bma12g00878 344 SMART c2h2final6 88 110 IPR013087 -
Bma12g00878 344 SMART c2h2final6 268 290 IPR013087 -
Bma12g00878 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 229 IPR013087 -
Bma12g00878 344 Gene3D Classic Zinc Finger 200 290 - -
Bma12g00878 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 295 IPR013087 -
Bma12g00878 344 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 36 344 - -
Bma12g00878 344 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 36 344 - -
Bma12g00878 344 MobiDBLite consensus disorder prediction 32 82 - -
Bma12g00878 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Bma12g00878 344 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Bma12g00878 344 Pfam C2H2-type zinc finger 89 112 - -
Bma12g00878 344 Pfam C2H2-type zinc finger 268 292 - -
Bma12g00878 344 Pfam C2H2-type zinc finger 202 225 - -
Bma12g00878 344 SUPERFAMILY beta-beta-alpha zinc fingers 89 224 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00845 Bma-Chr3:8086824 Bma12g00878 Bma-Chr12:39990988 1.34E-06 dispersed
Bma06g00159 Bma-Chr6:2060890 Bma12g00878 Bma-Chr12:39990988 4.87E-08 dispersed
Bma12g00878 Bma-Chr12:39990988 Bma05g00055 Bma-Chr5:2378669 7.76E-19 dispersed
Bma13g01144 Bma-Chr13:44625807 Bma12g00878 Bma-Chr12:39990988 3.14E-08 dispersed
Bma02g01020 Bma-Chr2:51565280 Bma12g00878 Bma-Chr12:39990988 6.18E-31 transposed
Bma12g00878 Bma-Chr12:39990988 Bma02g01322 Bma-Chr2:55724639 8.08E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58147 PF13912 zf-C2H2_6 6.50E-11 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00878 - - jre:108997351 315.849