Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00880 ATGAAGAAAGCCGGTACCCCTATAACAGACTTCTCGCTGTTCCCTTCTGTCTTCAAGGCTTGTTCAAATCTGTCTCTTAAACACGGTGAGTATCTCCATGGTTATTTCATCAAACAAGGGCTTGATTCAGTCACTTCCATTTCTAATTCAGCTATAGATTTCTACATGAAATGGGGCGATTTGGGTTCTGCGCGCACTCTTTTCGATTGCTTGGAAAACAGAGATTCCATCTCTTGGAACATAATGGTTCATGGAAATCTTAATTACGATTCTTTTGAAGAAGGATTGCAATGGTTTAAGAAAGGAAGAAACGCTTGCTTTGTCCCCAATACTTCCACTATGGTGCTTGTAATTCGAGCATGTCGTAAACTGGAAGCTTATCTCGAAGGATTAGAATTCCATGGCTACGTGATTCGATGCGGGTTTTGGGATATTCCTTCGGTTCAAAACTCATTGTTAGCTTTTTATGCAGATACCAACATTGATTGGGCTCATAAGCTGTTCGACGAAATGCCTGAAAGAGATGTCATATCTTGGAGCGTTATGATTGGAGGGTATGCTGTAAATGACAAAGCCCATGCTGGCTTGCACGTGTTCAAAACGATGTTATCCAAGGCTGAACCAGATGGGGTGACTATGGTAAGTGCCATTAAAGCATGTGCTAATTTAGAAGATATAAAACTGGGAATGATGATGCATGGTTTGGTGAATGTTAGAGGCTTGGCATTTGATCTGTTTATAGGAAACTCATTGATAGATATGTATTCCAGGTGTTATGACCCAAAATCCGCATTTGAAGTTTTCAACGAGATGCCACAGAAAAACATCGTCTCGTTGAATTCGATGTTATCGGCATGTGTCCTCAACGAAAAACATTGGGAAGCTCTATCATTGTTATATTCGATGGAGACGGCAGGAATCGAGGCAGATGAGATTACGCTCGTGAATATTCTTCAATTATGCAAGCATTTCACGCAGCCGTTGCAATGTAAAGCGGTCCACTGTATAATGATACATAAAGAAGTCGAAACAAACGAACTTTTGGTTAATTCTCTGATGGATGCATATGCAAAATGTCATCTCGTTAGTCTTGCATATAGACTCTTTGAAAGGATGAGTCGCAAAGATGTGGTGTCTTGGAGTACGATGATTTCTGGGTTCACCCATTGCGGCAATCCTCATCAAGCAATGGCTACCTTCAAGGAAATGAATCGGGCAGAAGTGAAGCCAAACGAGATAACCATGATCAACCTTCTTGAGGCATGTGCACTTTCTGCAGAATTGAAAAGGTCGAAGTGGGCCCACGGGGCCACTCTCAAGAGGTGTGGCGGATCCGAGGTAACTGTCGGAACTGCCATTGTCGACATGTACTCAAAATGCGGAGATGTAGTATCCTCGAGACGGGTTTTTGACCAAATCAGCAGGAAAAATGTCGTGTCGTGGAGTGCAATGATGAGAGCGTACGGAATGAATGGTCGTGGGTCCGAAGTCGTAGATTTGCTGTTGGAAATGAAACGAAATGGCGTCAAGCCGAATTCAGCCACTGCTTTATCGTATCTATCAGCTTGCAATCACGCGGGATTGGTCGAAGAGGGGATTTCCTTTTTCATGTCTATGACTACAGAATATGAGATCGTACCCGACCGGGAGCATTACTCGTGTGCAGTGGACATGTTATGTCGAGCCGGAAAGTTAGAAAGTGCAGTGGAATTGATTAAGAGACTGCCTGAAGGAATGGAGGGCAGTGCAGGTTTATGGGGAGCAGTCCTGTGCTCTTGCAGAAGCCAAGTGAAGAGTGATCTCGTCTCGGAAGCCATCGATCGAGTGCTTCGGCTGGAGCCTCGTAGCTCGTTCGGCTACATGATTGGCTCGAGCTTGTATGCTGCCAATGGGTCGAAGAAGGATTCCGCAAAGATGAGAAAGATGGCTAGAGAGCGGGGAGTGAAGGTTTCTGCTGGGTATAGTTTGGTTCATGTTGATGATATGGCTTACAGGTTCATTGCTGGAGATGGGTCTCACCCAGAAACAGGTAAGATATACTCCATGGTTAGCCAATTGCATTATATGATGAAGATGGATTTGATCACCAATGTTTGA 2097 44.06 MKKAGTPITDFSLFPSVFKACSNLSLKHGEYLHGYFIKQGLDSVTSISNSAIDFYMKWGDLGSARTLFDCLENRDSISWNIMVHGNLNYDSFEEGLQWFKKGRNACFVPNTSTMVLVIRACRKLEAYLEGLEFHGYVIRCGFWDIPSVQNSLLAFYADTNIDWAHKLFDEMPERDVISWSVMIGGYAVNDKAHAGLHVFKTMLSKAEPDGVTMVSAIKACANLEDIKLGMMMHGLVNVRGLAFDLFIGNSLIDMYSRCYDPKSAFEVFNEMPQKNIVSLNSMLSACVLNEKHWEALSLLYSMETAGIEADEITLVNILQLCKHFTQPLQCKAVHCIMIHKEVETNELLVNSLMDAYAKCHLVSLAYRLFERMSRKDVVSWSTMISGFTHCGNPHQAMATFKEMNRAEVKPNEITMINLLEACALSAELKRSKWAHGATLKRCGGSEVTVGTAIVDMYSKCGDVVSSRRVFDQISRKNVVSWSAMMRAYGMNGRGSEVVDLLLEMKRNGVKPNSATALSYLSACNHAGLVEEGISFFMSMTTEYEIVPDREHYSCAVDMLCRAGKLESAVELIKRLPEGMEGSAGLWGAVLCSCRSQVKSDLVSEAIDRVLRLEPRSSFGYMIGSSLYAANGSKKDSAKMRKMARERGVKVSAGYSLVHVDDMAYRFIAGDGSHPETGKIYSMVSQLHYMMKMDLITNV 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40020565 40022661 - Bma008204.1 Bma12g00880 92306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00880 698 Pfam PPR repeat family 476 522 IPR002885 -
Bma12g00880 698 Pfam PPR repeat family 375 423 IPR002885 -
Bma12g00880 698 Pfam PPR repeat 551 575 IPR002885 -
Bma12g00880 698 Pfam PPR repeat 277 307 IPR002885 -
Bma12g00880 698 Pfam PPR repeat 177 205 IPR002885 -
Bma12g00880 698 Pfam PPR repeat 249 276 IPR002885 -
Bma12g00880 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 375 IPR002885 -
Bma12g00880 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Bma12g00880 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 107 424 - -
Bma12g00880 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 207 670 - -
Bma12g00880 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 323 - -
Bma12g00880 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Bma12g00880 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Bma12g00880 698 TIGRFAM PPR: pentatricopeptide repeat domain 249 277 IPR002885 -
Bma12g00880 698 TIGRFAM PPR: pentatricopeptide repeat domain 350 378 IPR002885 -
Bma12g00880 698 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Bma12g00880 698 TIGRFAM PPR: pentatricopeptide repeat domain 479 513 IPR002885 -
Bma12g00880 698 Gene3D Tetratricopeptide repeat domain 330 434 IPR011990 GO:0005515
Bma12g00880 698 Gene3D Tetratricopeptide repeat domain 232 329 IPR011990 GO:0005515
Bma12g00880 698 Gene3D Tetratricopeptide repeat domain 144 231 IPR011990 GO:0005515
Bma12g00880 698 Gene3D Tetratricopeptide repeat domain 449 664 IPR011990 GO:0005515
Bma12g00880 698 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00880 - - - qsu:112025233 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00880 Bma-Chr12:40020565 Bma01g01463 Bma-Chr1:26738784 1.40E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013720 1 2 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00880 Bma_Chr12 FPKM 0.196145 0.680597 0.52266 0.66938 2.240608 2.678582 1.952176 0.48577 0.730008 1.000279