Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00887 ATGTCGTCCGACTATGGCGGCTGGTGTAATTTCCCCAATGAACACTTTGAAATGTCTGAGGCGGCTTTTTCTCAAATCGCAGAGAAGATAGCTGACATTGTACCTGTTCAGTATAGAAGGGTAAAGTGCGAGAGAAATGGCGGGGTTAGGTTCAGGGTGAGTGGAAATTCTCATTTCTGTCAAGTTTTGATCACAAATGTTGGGGTTGACGGTGAAGTTGTGGGGGTGAAGGTGAAGGGATCAAGAACAGGGTGGATACCCATGGCTAGAAATTGGGGACAGAATTGGCAAAGCAATGTCAATCTTAAAGGGCAGCCTCTTTCTTTTGAGGTAACTACAAGCAATGGGAAGACATTGACTTCGTACAATGTAGCTCCACCAAACTGGCAGTTTGGTCAGACTTATGAAGGTAAACAATTCTAA 423 44.44 MSSDYGGWCNFPNEHFEMSEAAFSQIAEKIADIVPVQYRRVKCERNGGVRFRVSGNSHFCQVLITNVGVDGEVVGVKVKGSRTGWIPMARNWGQNWQSNVNLKGQPLSFEVTTSNGKTLTSYNVAPPNWQFGQTYEGKQF 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40166936 40167493 + Bma008214.1 Bma12g00887 92313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00887 140 Gene3D - 3 43 IPR036908 -
Bma12g00887 140 PRINTS Expansin/Lol pI family signature 31 47 IPR007118 GO:0005576
Bma12g00887 140 PRINTS Expansin/Lol pI family signature 123 137 IPR007118 GO:0005576
Bma12g00887 140 PRINTS Expansin/Lol pI family signature 85 99 IPR007118 GO:0005576
Bma12g00887 140 Gene3D - 44 140 IPR036749 -
Bma12g00887 140 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 58 137 IPR007117 -
Bma12g00887 140 SUPERFAMILY Barwin-like endoglucanases 7 48 IPR036908 -
Bma12g00887 140 Pfam Expansin C-terminal domain 49 126 IPR007117 -
Bma12g00887 140 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 48 IPR007112 -
Bma12g00887 140 SUPERFAMILY PHL pollen allergen 45 137 IPR036749 -
Bma12g00887 140 PRINTS Expansin signature 123 139 IPR002963 GO:0009664
Bma12g00887 140 PRINTS Expansin signature 6 23 IPR002963 GO:0009664
Bma12g00887 140 PRINTS Expansin signature 47 59 IPR002963 GO:0009664
Bma12g00887 140 PRINTS Expansin signature 94 115 IPR002963 GO:0009664
Bma12g00887 140 PRINTS Expansin signature 23 36 IPR002963 GO:0009664
Bma12g00887 140 PRINTS Expansin signature 59 80 IPR002963 GO:0009664
Bma12g00887 140 PANTHER EXPANSIN-A20 1 140 - -
Bma12g00887 140 PANTHER EXPANSIN-A15 1 140 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01297 Bma-Chr1:17676862 Bma12g00887 Bma-Chr12:40166936 1.55E-102 dispersed
Bma12g00887 Bma-Chr12:40166936 Bma08g01058 Bma-Chr8:49674715 1.15E-60 dispersed
Bma12g00887 Bma-Chr12:40166936 Bma03g00200 Bma-Chr3:1535352 1.29E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00887 - - jcu:105636558 251.906