Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00888 ATGGCCACTCTGGCTGCTACTCCATTGATGAAGATCGGAGTTTCTTCAGAGCTGGCTGCCCCACTAGTCCGCTTCTCAAGCTTTTACCCTAGAAAGAGACTTGTTCCTATTTTTCTACGGTGCTTTTCTGTCTCTGCTTCTGTAAAGAAGTCTGAAGACGGAGAAGTTCGCGTTCGATTCGCTCCTTCTCCAACTGGGAATCTGCATGTTGGTGGAGCAAGAACTGCTCTCTTCAATACTTGTTCGCTAGGTTGGTCCAAAGGAGGTAAATTTATTCTCAGAATTGAAGACACTGACCTGGAAAGGTCTACTCGGGAGTCTGAGGAAGCCGTCTTGCGAGATTTGTCTTGGCTTGGTCTGCAATGGGATGAAGGACCTGGTGTTGGTGGAGACTATGGTCCATACCGGCAATCAGAGAGAAATTCTCTCTACAAACAATATGCCAATAAACTTCTTGATTCTAGTTATGTCTACCGCTGTTTTTGTTCGAATGAGGAGCTTGAACAGATGAAGGAAATAGCAAAATTAAAGCAATTACCTCCAGTGTACACAGGAAAGTGGGCCACTGCTACTGAAGAAGAAATACAAGAAGAACTGGTTAGTTGGAACTTGGACACTCTTGGGGATTTCGTAATTATGAGGAGTTACAGGGAAATGGGGTATCTACCACAGGGAATGGTAAACTATCTTGCTCTATTAGGTTGGGGCGATGGCACAGAAAATGAATTTTCACGCTCGATCAACTTGGTTTTCGAAAAGTTTTTGATCGAGCGTGTGAATAAGAGTGGTGCTGTTTTTGACTCTGTGAAGTTAAGGTGGATGAACGGTCAGCATTTAAGAGCCATTCCGGCGGAAGATCTGGTCAAATTGATTGGCAATCGCTGGAAAAGCTCTGGAATCCTTACAGAACCGGAGGGTCCATTTGTTGAAGAAGCAGTTCAACTACTCCTGTCAAATCTCCTCTCTTATCCCTTACATAATACATTGATGAGTCCTGAAGCTAAACCCCTCTTGGAAGATAAGCTTTCTGACTTTTCAATGAGCTTATTAGCTGCCTATGACAATGGCGATGTTCTCGGTGCGCTCGAGGAAGGTCATTCTGGCTGGCAAAAATGGGTGAAGAGCTTTGGCAAATCATTGAAACTCAAGGGAAAATCACTTTTCATGCCTCTCAGATTGTTGCTCACCGGAAAACTTCATGGCCCGGATATGGGTGCTACCGTGATTTTACTTCATAAAGCTGGATTTTCCGGCATTGTTGCGCCCGAAACTGGGTTTGTACCAATTGAAGACCGGTTCAAAATTTTGAGGCAAATTAATTGGGACAAACTAGTCGCCGATCAGCCCCTTTTGGAGACTGCTGCCACTTCCAATGTATCAAACTGA 1386 44.44 MATLAATPLMKIGVSSELAAPLVRFSSFYPRKRLVPIFLRCFSVSASVKKSEDGEVRVRFAPSPTGNLHVGGARTALFNTCSLGWSKGGKFILRIEDTDLERSTRESEEAVLRDLSWLGLQWDEGPGVGGDYGPYRQSERNSLYKQYANKLLDSSYVYRCFCSNEELEQMKEIAKLKQLPPVYTGKWATATEEEIQEELVSWNLDTLGDFVIMRSYREMGYLPQGMVNYLALLGWGDGTENEFSRSINLVFEKFLIERVNKSGAVFDSVKLRWMNGQHLRAIPAEDLVKLIGNRWKSSGILTEPEGPFVEEAVQLLLSNLLSYPLHNTLMSPEAKPLLEDKLSDFSMSLLAAYDNGDVLGALEEGHSGWQKWVKSFGKSLKLKGKSLFMPLRLLLTGKLHGPDMGATVILLHKAGFSGIVAPETGFVPIEDRFKILRQINWDKLVADQPLLETAATSNVSN 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40168425 40172961 + Bma008215.1 Bma12g00888 92314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00888 461 Pfam Anticodon binding domain 369 413 IPR045462 -
Bma12g00888 461 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 214 438 - -
Bma12g00888 461 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 47 199 - -
Bma12g00888 461 PANTHER GLUTAMATE--TRNA LIGASE 214 438 - -
Bma12g00888 461 SUPERFAMILY Nucleotidylyl transferase 56 266 - -
Bma12g00888 461 Pfam tRNA synthetases class I (E and Q), catalytic domain 55 198 IPR020058 GO:0004812|GO:0005524|GO:0043039
Bma12g00888 461 Gene3D - 208 281 IPR020061 GO:0005524
Bma12g00888 461 Gene3D HUPs 46 207 IPR014729 -
Bma12g00888 461 PRINTS Glutamyl-tRNA synthetase signature 59 71 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Bma12g00888 461 PRINTS Glutamyl-tRNA synthetase signature 89 102 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Bma12g00888 461 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 62 73 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma12g00888 461 Gene3D - 329 417 IPR020751 -
Bma12g00888 461 PANTHER GLUTAMATE--TRNA LIGASE 47 199 - -
Bma12g00888 461 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 267 413 IPR008925 GO:0000049
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00888 K01885 EARS, gltX; glutamyl-tRNA synthetase [EC:6.1.1.17] - csv:101212759 355.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01296 Bma-Chr1:17671382 Bma12g00888 Bma-Chr12:40168425 5.59E-139 dispersed
Bma12g00888 Bma-Chr12:40168425 Bma14g01136 Bma-Chr14:15085546 5.20E-11 dispersed
Bma12g00888 Bma-Chr12:40168425 Bma14g01131 Bma-Chr14:14348701 3.28E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g314 . Blo15g00412 Bda06g00451 . Bpe07g00684 . . Bma12g00888 Cmo19g00835 . . . . . Sed05g2139 . Cpe15g00657 Bhi05g01543 Tan02g0541 Cmetu11g0170 . Hepe02g0346 . . Cla02g00327 Cam02g0336 Cec02g0336 Cco02g0340 Clacu02g0327 Cmu02g0325 Cre02g0658 . . . Cone10ag1201 . Csa07g00215 . . . . . . . . . . . . . . Cma19g00816 . Car19g00634 . . . . . . . . . . . . . . . . Lsi11g01310 . Chy01g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010497 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00888 Bma_Chr12 FPKM 1.562326 1.441326 5.180988 5.114931 22.243183 21.968863 22.942419 3.84345 4.143893 3.977664