Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00892 | ATGGAGTCACAATCAGGAGATCTTCAGAAAGTAGCTCAAGACTTGACGGATGCTTTGTCTACGCTTGAGCATACATTCGTCGTCTCCGATGCTACAAAACCAGATTGCCCGATGGTTTACGCCAGCAGTGGGTTTTTCACCATGACTGGCTATTCCTCAGACGAAGTCATTGGAAGGAACTGCCGATTCCTTCAAGGAGCAGACACAGACCAAAATGAAGTTGCCAAAATTCGAAATGCAGTGAGGAATGGAAAAAGCTACTGCGGCCGGCTCTTGAACTACAAGAAGAACGGTTCTCCTTTCTGGAATCTTCTCACTGTCACTCCAATTAAAGATGAAAATGGCAAAGCCATCAAATTTATCGGAATGCAGGTTGAGGTCAGCAAATACACAGAAGGCGCGATCGACAAGGCATTACGTCCAAATGGATTGCCCCAATCATTAATCCGCTATGATGCTCGACAGAAAGAGAAGGCTCTGAACTCAATTGAAGAAGTTCTCCAGACTGTTAGACACCCTCATTCTCTCACTCGAACTACCAGCCACAATTCTGTCTTCAAACGCCAAGAGTCTACACAATCCAAATCTGACTATGCCGAAGCTATCACTACGCCAGGGAGACAAACTTATCAATTGGATCCTAAAGTTGATCTGTCTCATTCAGGTGCATACGGAGATTCGTCAAAGAAATTTGGATTATCGAGTCGGCTTTCCTTGATGGGATTCAAAGGGAAGTCTATGAGCACAACAGGGAGGCATGAACAAAAGACAACCATGGAACCAGTGATTTTGATGACTAAAGAAATAGAGCGCATTGACAGCTGGGATCATGATGAAAGAGAAAGGGATATTCGTCAAGGAATCGATTTGGCAACCACGTTGGAACGAATTGAGAAAAATTTTGTGATTACAGATCCTAGAATTCCTGATAATCCAATTATATTTGCATCTGATAGCTTTCTCGAATTGACGGAATATAAACGAGAAGAAGTCTTAGGAAGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGCCACTGTGTCACTGATAAGAGATGCTATCAGAGAACAGAAGGATGTCACAGTTCAGTTAATGAACTATACAAAGACTGGTAAGAAGTTTTGGAATTTATTCCACTTGCAGCCCATGCGAGACCAAAAGGGTGAGTTGCAATACTTCATTGGTGTACAACTAGATGGAAGTGATGACGTGGAACCTCTGCGAAACCGTCTTTCGGAGAAAACAGAACAACAAAGTGCGATGTTGGTCAAAGCAACAGCAGAAAATGTGGACGAGGCTGTCCGTGAGCTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCTGTCTTCCCAAAACCTCACAAGAAGGACAATTGCTCTTGGTTAGCAATAAAAAAGATTACTCAACAAGGTGAAAAAATCGGACTATATCATTTTAAACCCATAAGACCACTAGGTAGTGGAGATACTGGGAGTGTTCACTTGGTGGAACTGGAAGGTTCAGGAGAACTTTATGCTATTAAAGTAATGGACAAGGATGTAATGTTGAACAGGAACAAGGTTCATAGAGCATGCATTGAAAGAGAAATTATCTCTTATCTGGATCATCCTTTTCTTCCGACTCTGTACGCATCATTTGAGACTCCTACACACGTTTGTTTGGTAACAGACTTTTACGCTGGTGGAGAATTGTATGCATTGCTCGAAAAGCAACCATTGAAAATGTTCAAAGAGGAATCTGCAAGGTTTTATGTTGCCGAGGTTGTCATTGCATTGGAATATCTACACTGCTTAGGAATTATTTATCGGGATCTGAAGCCTGAAAATATTTTAGTTCAAAAGGACGGTCATATTGTATTAACCGATTTTGATTTGTCATTTTTGACTTCCTCGAAGCCTCAGGTTATAAAGTTTCCCTCACAAAGCAAACGGAGGTCGAAGAAGAATCAACTGCCACCTGCATTTGTTGCGGAACCAGTTTCGCACTCGAATTCATTTGTTGGAACTGAAGAGTACATTGCTCCTGAAATTATTACTGGTGCCGGCCACACGAGTGCTATTGATTGGTGGACTCTTGGTATATTATTGTATGAATTGCTCTATGGACGTTCACCATTTAGGGGAAAGAACAGGCAGAAGACTTTTACCAACATATTGCACAAAGAACTAACCTTCCCGAGTAGCATTCCGGTCAGTCTTCAAGCAAGGCAAATGATAAATGATTTGCTCCAAAGAGACCCAGCCGCTCGTTTAGGCTCAAAAACCGGTGCCAACGAAATCAAACAACATCCTTTTTTCCGCGGAATCAATTGGCCTCTAATCCGATGCATGACACCGCCCCCGCTGGATGCTCCTCTCAAATTGATTGAAAAGGATCCAAATGCAAAGGATATTAAGTGGGAAGATGATGGTGTGCTTACCAGGTCAATCGATTTGGAGATTTTCTGA | 2472 | 42.35 | MESQSGDLQKVAQDLTDALSTLEHTFVVSDATKPDCPMVYASSGFFTMTGYSSDEVIGRNCRFLQGADTDQNEVAKIRNAVRNGKSYCGRLLNYKKNGSPFWNLLTVTPIKDENGKAIKFIGMQVEVSKYTEGAIDKALRPNGLPQSLIRYDARQKEKALNSIEEVLQTVRHPHSLTRTTSHNSVFKRQESTQSKSDYAEAITTPGRQTYQLDPKVDLSHSGAYGDSSKKFGLSSRLSLMGFKGKSMSTTGRHEQKTTMEPVILMTKEIERIDSWDHDERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYKREEVLGRNCRFLQGPETDQATVSLIRDAIREQKDVTVQLMNYTKTGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDDVEPLRNRLSEKTEQQSAMLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKDNCSWLAIKKITQQGEKIGLYHFKPIRPLGSGDTGSVHLVELEGSGELYAIKVMDKDVMLNRNKVHRACIEREIISYLDHPFLPTLYASFETPTHVCLVTDFYAGGELYALLEKQPLKMFKEESARFYVAEVVIALEYLHCLGIIYRDLKPENILVQKDGHIVLTDFDLSFLTSSKPQVIKFPSQSKRRSKKNQLPPAFVAEPVSHSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYELLYGRSPFRGKNRQKTFTNILHKELTFPSSIPVSLQARQMINDLLQRDPAARLGSKTGANEIKQHPFFRGINWPLIRCMTPPPLDAPLKLIEKDPNAKDIKWEDDGVLTRSIDLEIF | 823 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 40248529 | 40257259 | - | Bma008220.1 | Bma12g00892 | 92318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00892 | 823 | CDD | PAS | 301 | 401 | IPR000014 | - | |
Bma12g00892 | 823 | ProSiteProfiles | PAS repeat profile. | 11 | 84 | IPR000014 | - | |
Bma12g00892 | 823 | SMART | pas_2 | 13 | 82 | IPR000014 | - | |
Bma12g00892 | 823 | SMART | pas_2 | 288 | 357 | IPR000014 | - | |
Bma12g00892 | 823 | Gene3D | Phosphorylase Kinase; domain 1 | 486 | 570 | - | - | |
Bma12g00892 | 823 | ProSiteProfiles | PAC domain profile. | 360 | 414 | IPR000700 | - | |
Bma12g00892 | 823 | Pfam | Protein kinase domain | 489 | 774 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00892 | 823 | ProSitePatterns | Protein kinases ATP-binding region signature. | 493 | 516 | IPR017441 | GO:0005524 | |
Bma12g00892 | 823 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 302 | 401 | IPR035965 | - | |
Bma12g00892 | 823 | Pfam | PAS domain | 32 | 128 | IPR000014 | - | |
Bma12g00892 | 823 | Pfam | PAS domain | 309 | 401 | IPR000014 | - | |
Bma12g00892 | 823 | ProSiteProfiles | Protein kinase domain profile. | 487 | 774 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00892 | 823 | CDD | STKc_phototropin_like | 486 | 798 | - | - | |
Bma12g00892 | 823 | PANTHER | BNAA02G07840D PROTEIN | 7 | 822 | - | - | |
Bma12g00892 | 823 | TIGRFAM | sensory_box: PAS domain S-box protein | 38 | 128 | IPR000014 | - | |
Bma12g00892 | 823 | TIGRFAM | sensory_box: PAS domain S-box protein | 311 | 401 | IPR000014 | - | |
Bma12g00892 | 823 | ProSiteProfiles | PAS repeat profile. | 286 | 359 | IPR000014 | - | |
Bma12g00892 | 823 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 608 | 620 | IPR008271 | GO:0004672|GO:0006468 | |
Bma12g00892 | 823 | CDD | PAS | 38 | 127 | IPR000014 | - | |
Bma12g00892 | 823 | SMART | pac_2 | 88 | 130 | IPR001610 | - | |
Bma12g00892 | 823 | SMART | pac_2 | 363 | 405 | IPR001610 | - | |
Bma12g00892 | 823 | SUPERFAMILY | Protein kinase-like (PK-like) | 465 | 799 | IPR011009 | - | |
Bma12g00892 | 823 | Gene3D | PAS domain | 25 | 197 | - | - | |
Bma12g00892 | 823 | PANTHER | FLIPPASE KINASE 1-RELATED | 7 | 822 | - | - | |
Bma12g00892 | 823 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 32 | 124 | IPR035965 | - | |
Bma12g00892 | 823 | Gene3D | PAS domain | 275 | 439 | - | - | |
Bma12g00892 | 823 | SMART | serkin_6 | 487 | 774 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00892 | 823 | Gene3D | Transferase(Phosphotransferase) domain 1 | 571 | 789 | - | - | |
Bma12g00892 | 823 | ProSiteProfiles | PAC domain profile. | 85 | 139 | IPR000700 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00703 | Bma12g00892 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00121 | Bma-Chr7:1949041 | Bma12g00892 | Bma-Chr12:40248529 | 0 | dispersed | |
Bma08g00703 | Bma-Chr8:42687325 | Bma12g00892 | Bma-Chr12:40248529 | 0 | dispersed | |
Bma09g00763 | Bma-Chr9:46146734 | Bma12g00892 | Bma-Chr12:40248529 | 1.47E-67 | dispersed | |
Bma12g00892 | Bma-Chr12:40248529 | Bma14g00904 | Bma-Chr14:10219310 | 4.74E-113 | dispersed | |
Bma12g00892 | Bma-Chr12:40248529 | Bma11g00144 | Bma-Chr11:1284540 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66822 | PF00069 | Pkinase | 1.50E-60 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00892 | K20715 | - | jre:108997379 | 1301.19 |