Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00892 ATGGAGTCACAATCAGGAGATCTTCAGAAAGTAGCTCAAGACTTGACGGATGCTTTGTCTACGCTTGAGCATACATTCGTCGTCTCCGATGCTACAAAACCAGATTGCCCGATGGTTTACGCCAGCAGTGGGTTTTTCACCATGACTGGCTATTCCTCAGACGAAGTCATTGGAAGGAACTGCCGATTCCTTCAAGGAGCAGACACAGACCAAAATGAAGTTGCCAAAATTCGAAATGCAGTGAGGAATGGAAAAAGCTACTGCGGCCGGCTCTTGAACTACAAGAAGAACGGTTCTCCTTTCTGGAATCTTCTCACTGTCACTCCAATTAAAGATGAAAATGGCAAAGCCATCAAATTTATCGGAATGCAGGTTGAGGTCAGCAAATACACAGAAGGCGCGATCGACAAGGCATTACGTCCAAATGGATTGCCCCAATCATTAATCCGCTATGATGCTCGACAGAAAGAGAAGGCTCTGAACTCAATTGAAGAAGTTCTCCAGACTGTTAGACACCCTCATTCTCTCACTCGAACTACCAGCCACAATTCTGTCTTCAAACGCCAAGAGTCTACACAATCCAAATCTGACTATGCCGAAGCTATCACTACGCCAGGGAGACAAACTTATCAATTGGATCCTAAAGTTGATCTGTCTCATTCAGGTGCATACGGAGATTCGTCAAAGAAATTTGGATTATCGAGTCGGCTTTCCTTGATGGGATTCAAAGGGAAGTCTATGAGCACAACAGGGAGGCATGAACAAAAGACAACCATGGAACCAGTGATTTTGATGACTAAAGAAATAGAGCGCATTGACAGCTGGGATCATGATGAAAGAGAAAGGGATATTCGTCAAGGAATCGATTTGGCAACCACGTTGGAACGAATTGAGAAAAATTTTGTGATTACAGATCCTAGAATTCCTGATAATCCAATTATATTTGCATCTGATAGCTTTCTCGAATTGACGGAATATAAACGAGAAGAAGTCTTAGGAAGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGCCACTGTGTCACTGATAAGAGATGCTATCAGAGAACAGAAGGATGTCACAGTTCAGTTAATGAACTATACAAAGACTGGTAAGAAGTTTTGGAATTTATTCCACTTGCAGCCCATGCGAGACCAAAAGGGTGAGTTGCAATACTTCATTGGTGTACAACTAGATGGAAGTGATGACGTGGAACCTCTGCGAAACCGTCTTTCGGAGAAAACAGAACAACAAAGTGCGATGTTGGTCAAAGCAACAGCAGAAAATGTGGACGAGGCTGTCCGTGAGCTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCTGTCTTCCCAAAACCTCACAAGAAGGACAATTGCTCTTGGTTAGCAATAAAAAAGATTACTCAACAAGGTGAAAAAATCGGACTATATCATTTTAAACCCATAAGACCACTAGGTAGTGGAGATACTGGGAGTGTTCACTTGGTGGAACTGGAAGGTTCAGGAGAACTTTATGCTATTAAAGTAATGGACAAGGATGTAATGTTGAACAGGAACAAGGTTCATAGAGCATGCATTGAAAGAGAAATTATCTCTTATCTGGATCATCCTTTTCTTCCGACTCTGTACGCATCATTTGAGACTCCTACACACGTTTGTTTGGTAACAGACTTTTACGCTGGTGGAGAATTGTATGCATTGCTCGAAAAGCAACCATTGAAAATGTTCAAAGAGGAATCTGCAAGGTTTTATGTTGCCGAGGTTGTCATTGCATTGGAATATCTACACTGCTTAGGAATTATTTATCGGGATCTGAAGCCTGAAAATATTTTAGTTCAAAAGGACGGTCATATTGTATTAACCGATTTTGATTTGTCATTTTTGACTTCCTCGAAGCCTCAGGTTATAAAGTTTCCCTCACAAAGCAAACGGAGGTCGAAGAAGAATCAACTGCCACCTGCATTTGTTGCGGAACCAGTTTCGCACTCGAATTCATTTGTTGGAACTGAAGAGTACATTGCTCCTGAAATTATTACTGGTGCCGGCCACACGAGTGCTATTGATTGGTGGACTCTTGGTATATTATTGTATGAATTGCTCTATGGACGTTCACCATTTAGGGGAAAGAACAGGCAGAAGACTTTTACCAACATATTGCACAAAGAACTAACCTTCCCGAGTAGCATTCCGGTCAGTCTTCAAGCAAGGCAAATGATAAATGATTTGCTCCAAAGAGACCCAGCCGCTCGTTTAGGCTCAAAAACCGGTGCCAACGAAATCAAACAACATCCTTTTTTCCGCGGAATCAATTGGCCTCTAATCCGATGCATGACACCGCCCCCGCTGGATGCTCCTCTCAAATTGATTGAAAAGGATCCAAATGCAAAGGATATTAAGTGGGAAGATGATGGTGTGCTTACCAGGTCAATCGATTTGGAGATTTTCTGA 2472 42.35 MESQSGDLQKVAQDLTDALSTLEHTFVVSDATKPDCPMVYASSGFFTMTGYSSDEVIGRNCRFLQGADTDQNEVAKIRNAVRNGKSYCGRLLNYKKNGSPFWNLLTVTPIKDENGKAIKFIGMQVEVSKYTEGAIDKALRPNGLPQSLIRYDARQKEKALNSIEEVLQTVRHPHSLTRTTSHNSVFKRQESTQSKSDYAEAITTPGRQTYQLDPKVDLSHSGAYGDSSKKFGLSSRLSLMGFKGKSMSTTGRHEQKTTMEPVILMTKEIERIDSWDHDERERDIRQGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYKREEVLGRNCRFLQGPETDQATVSLIRDAIREQKDVTVQLMNYTKTGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDDVEPLRNRLSEKTEQQSAMLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKDNCSWLAIKKITQQGEKIGLYHFKPIRPLGSGDTGSVHLVELEGSGELYAIKVMDKDVMLNRNKVHRACIEREIISYLDHPFLPTLYASFETPTHVCLVTDFYAGGELYALLEKQPLKMFKEESARFYVAEVVIALEYLHCLGIIYRDLKPENILVQKDGHIVLTDFDLSFLTSSKPQVIKFPSQSKRRSKKNQLPPAFVAEPVSHSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYELLYGRSPFRGKNRQKTFTNILHKELTFPSSIPVSLQARQMINDLLQRDPAARLGSKTGANEIKQHPFFRGINWPLIRCMTPPPLDAPLKLIEKDPNAKDIKWEDDGVLTRSIDLEIF 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40248529 40257259 - Bma008220.1 Bma12g00892 92318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00892 823 CDD PAS 301 401 IPR000014 -
Bma12g00892 823 ProSiteProfiles PAS repeat profile. 11 84 IPR000014 -
Bma12g00892 823 SMART pas_2 13 82 IPR000014 -
Bma12g00892 823 SMART pas_2 288 357 IPR000014 -
Bma12g00892 823 Gene3D Phosphorylase Kinase; domain 1 486 570 - -
Bma12g00892 823 ProSiteProfiles PAC domain profile. 360 414 IPR000700 -
Bma12g00892 823 Pfam Protein kinase domain 489 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00892 823 ProSitePatterns Protein kinases ATP-binding region signature. 493 516 IPR017441 GO:0005524
Bma12g00892 823 SUPERFAMILY PYP-like sensor domain (PAS domain) 302 401 IPR035965 -
Bma12g00892 823 Pfam PAS domain 32 128 IPR000014 -
Bma12g00892 823 Pfam PAS domain 309 401 IPR000014 -
Bma12g00892 823 ProSiteProfiles Protein kinase domain profile. 487 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00892 823 CDD STKc_phototropin_like 486 798 - -
Bma12g00892 823 PANTHER BNAA02G07840D PROTEIN 7 822 - -
Bma12g00892 823 TIGRFAM sensory_box: PAS domain S-box protein 38 128 IPR000014 -
Bma12g00892 823 TIGRFAM sensory_box: PAS domain S-box protein 311 401 IPR000014 -
Bma12g00892 823 ProSiteProfiles PAS repeat profile. 286 359 IPR000014 -
Bma12g00892 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Bma12g00892 823 CDD PAS 38 127 IPR000014 -
Bma12g00892 823 SMART pac_2 88 130 IPR001610 -
Bma12g00892 823 SMART pac_2 363 405 IPR001610 -
Bma12g00892 823 SUPERFAMILY Protein kinase-like (PK-like) 465 799 IPR011009 -
Bma12g00892 823 Gene3D PAS domain 25 197 - -
Bma12g00892 823 PANTHER FLIPPASE KINASE 1-RELATED 7 822 - -
Bma12g00892 823 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 124 IPR035965 -
Bma12g00892 823 Gene3D PAS domain 275 439 - -
Bma12g00892 823 SMART serkin_6 487 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00892 823 Gene3D Transferase(Phosphotransferase) domain 1 571 789 - -
Bma12g00892 823 ProSiteProfiles PAC domain profile. 85 139 IPR000700 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00703 Bma12g00892 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00121 Bma-Chr7:1949041 Bma12g00892 Bma-Chr12:40248529 0 dispersed
Bma08g00703 Bma-Chr8:42687325 Bma12g00892 Bma-Chr12:40248529 0 dispersed
Bma09g00763 Bma-Chr9:46146734 Bma12g00892 Bma-Chr12:40248529 1.47E-67 dispersed
Bma12g00892 Bma-Chr12:40248529 Bma14g00904 Bma-Chr14:10219310 4.74E-113 dispersed
Bma12g00892 Bma-Chr12:40248529 Bma11g00144 Bma-Chr11:1284540 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66822 PF00069 Pkinase 1.50E-60 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00892 K20715 - jre:108997379 1301.19