Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00893 ATGGACGATAATGTTGAAACAAAAGGCAAAGTTTGTGTGACAGGAGCTTCTGGTTTTTTGGCTTCTTGGCTTGTCAAGCGGCTTCTTTTATCTGGGTATCATGTTGTTGGAACAGTAAGAGATCCAGGAAATGAAAAGAAGTTAGCACATTTGTGGAAGCTGGAAGGAGCGGATGAGAGGTTGCAGTTAGTGAAAGCGGATTTAATGAAAGATGGAAGCTTTGATGATGCTATCATGGCCTGCCATGGCGTCTTTCACACGGCATCCCCAGTTTTAAAGCCATCATCTGATCCAGAGGCAGAAATCTTGAAACCAGCCATTGATGGCACGTTGAATGTGCTGCGTTCATGCAAAAAGAATCCGTTTCTGAAGCGTGTGGTGCTCACTTCATCTTCTTCGACTGTGAGAGCAAGAGATGATTTTGACCCGAAAATACCTCTGGACGAGTCATCTTGGAGCTCGATTGACATGTGCAAAAGACTCCAGGTTTGGTACGTTGTGTCGAAAACTCTGGCCGAAAAGGCTGCATGGAATTTCTGCAATGAGAATGGGATTGATTTAGTCACTGTTCTTCCCTCCTTCGTAGTTGGTCCAAGTCTACCACCGGATTTATGTTCTACTGCATCGGACATTGTTGGTTTGCTGAAAGGAGAAACAGAGAAATTTCAGTGGCATGGGAGGATGGGTTACGTCCACATTGATGATGTTTCCCTCTGTCATATTCTACTCTACGAGCACCAGAATGCCCACGGGCGATACCTTTGCAGCTCGACGGTGCTCGACAACACGGATCTAGCGTCGTTGTTGTCAATCCGGTACCCATCTCTACCAATCAAAACAAGGTCAGTTTGTATAAATTTGTTAATAATTATGGAAGAATCATGGGTGAAACATGTTCATGGACATGTCAGGTTCGAGCCGCTAAACAGACCATATTATGAGCTCAACACCTCGAAGATTCAGAATCTGGGATTCAAGTTCAAGTCTATAGAAGAAATGTTTGATGATTGCGTTGAATCTCTTTTGAAGCAAGGCCATCTCTCTTTGGTCTAG 1053 44.16 MDDNVETKGKVCVTGASGFLASWLVKRLLLSGYHVVGTVRDPGNEKKLAHLWKLEGADERLQLVKADLMKDGSFDDAIMACHGVFHTASPVLKPSSDPEAEILKPAIDGTLNVLRSCKKNPFLKRVVLTSSSSTVRARDDFDPKIPLDESSWSSIDMCKRLQVWYVVSKTLAEKAAWNFCNENGIDLVTVLPSFVVGPSLPPDLCSTASDIVGLLKGETEKFQWHGRMGYVHIDDVSLCHILLYEHQNAHGRYLCSSTVLDNTDLASLLSIRYPSLPIKTRSVCINLLIIMEESWVKHVHGHVRFEPLNRPYYELNTSKIQNLGFKFKSIEEMFDDCVESLLKQGHLSLV 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40260477 40261935 - Bma008221.1 Bma12g00893 92319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00893 350 CDD FR_SDR_e 11 325 - -
Bma12g00893 350 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 347 - -
Bma12g00893 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 342 IPR036291 -
Bma12g00893 350 Gene3D - 5 350 - -
Bma12g00893 350 PANTHER OS08G0515900 PROTEIN 7 347 IPR033267 GO:0009555|GO:0080110
Bma12g00893 350 Pfam NAD dependent epimerase/dehydratase family 11 248 IPR001509 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00893 - - - jre:109006685 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00757 Bma-Chr1:6968737 Bma12g00893 Bma-Chr12:40260477 1.17E-78 dispersed
Bma10g00532 Bma-Chr10:6466135 Bma12g00893 Bma-Chr12:40260477 1.23E-43 dispersed
Bma11g00355 Bma-Chr11:3779129 Bma12g00893 Bma-Chr12:40260477 5.17E-72 dispersed
Bma12g00893 Bma-Chr12:40260477 Bma14g01708 Bma-Chr14:36201608 4.70E-87 dispersed
Bma12g00893 Bma-Chr12:40260477 Bma14g00556 Bma-Chr14:5985010 2.35E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g327 . . . . Bpe07g00689 . . Bma12g00893 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005971 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 3 4 1 2 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00893 Bma_Chr12 FPKM 10.605505 12.161761 10.762137 10.863926 22.016357 22.795399 22.86993 1.237451 1.498458 1.086757