Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00894 ATGACTTCCGCTCTCCAAGTGAAATATGGCATTCCAAAGGCTGTATTTCCTGTAATTGGCGGAGTCACTATTGGAATAATAGCCCTGGAATATCCTGAAATCCTTTACTGGGGTTTTCAAAATGTTGATATTTTGTTGGAATCTCGCCCATTTGTGAAAGGACTTTCAGCTATCTTATTAGTTCAGCTCGTAGCTGTGAAGATCCTGGCCACCTCTTTGTGCAGAGCCTCTGGTCTGGTTGGAGGCTACTATGCACCATCCCTCTTTATTGGGGCAGCAACAGGAATGGCTTATGGGAAATTTGTTGGTCTTGCAGTTGCTGGGTCTAATCCTGTTTTTCAACTCTCATTCTTGGACGTGGCATCACCTCAAGCATATGGCCTGGTTGGGATGGCAGCTACACTTGCAGGGGTTTGCCAGGTGCCTCTTACTTCAGTCTTGCTGCTCTTTGAATTGACACAAGATTACCGAATAGTGCTTCCGCTTCTTGGAGCTGTAGGGGTCTCATCATGGATTACATCTGGACAGACAAGGAGAGGAGATGGGAAGGAGATCAAGAAACAAAAACTGGAAAATAGTTTTATTAATCAACAATCTGTAGGTCCTACTGAAATTTCTGCCAGTTCTGCAACTTCTGAAAAAGCAACTTATCCAAGTGATCTATGTGAAATTGAAAGTTCACTATGTACAGATGATTCAAATAATGAAATTGTAGATTTAGAAAAGAGAATTAGTGTTTCAGAAGCCATGAAAACTAGATATGTGACTGTCTTGTTGAGCACTTTGGTTACAGATGCCTTGAGTCTCATGCTATCAACAAAGGAGTCTTGTGCCGTTGTTGTAGATGAAAATAACAATTTGATTGGCTTCCTTACACTTGAAGGCATTCAAGAATTTTGCACATATGCATCAACAAGCAAAAGAGCCAAGGACATTTTGGTATCTGAACTATGTTCTTGGATGACAGAATATGTCAATTGCCATGGACAGCCACTCCCAGTATGGATCTTTATACAGCTCAAATGA 1026 41.33 MTSALQVKYGIPKAVFPVIGGVTIGIIALEYPEILYWGFQNVDILLESRPFVKGLSAILLVQLVAVKILATSLCRASGLVGGYYAPSLFIGAATGMAYGKFVGLAVAGSNPVFQLSFLDVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGVSSWITSGQTRRGDGKEIKKQKLENSFINQQSVGPTEISASSATSEKATYPSDLCEIESSLCTDDSNNEIVDLEKRISVSEAMKTRYVTVLLSTLVTDALSLMLSTKESCAVVVDENNNLIGFLTLEGIQEFCTYASTSKRAKDILVSELCSWMTEYVNCHGQPLPVWIFIQLK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40263406 40266682 - Bma008222.1 Bma12g00894 92320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00894 341 Gene3D Clc chloride channel 3 198 - -
Bma12g00894 341 SUPERFAMILY Clc chloride channel 8 174 IPR014743 -
Bma12g00894 341 Pfam CBS domain 246 296 IPR000644 -
Bma12g00894 341 CDD Voltage_gated_ClC 8 170 - -
Bma12g00894 341 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 5 321 - -
Bma12g00894 341 SUPERFAMILY CBS-domain pair 244 299 IPR046342 -
Bma12g00894 341 Gene3D - 212 301 IPR046342 -
Bma12g00894 341 ProSiteProfiles CBS domain profile. 250 306 IPR000644 -
Bma12g00894 341 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 5 321 - -
Bma12g00894 341 Pfam Voltage gated chloride channel 8 173 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00894 - - - jre:109006687 430.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00894 Bma-Chr12:40263406 Bma13g01145 Bma-Chr13:44630504 1.76E-41 dispersed
Bma12g00894 Bma-Chr12:40263406 Bma10g00639 Bma-Chr10:8790012 5.81E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g331 . . . . Bpe07g00690 . . Bma12g00894 . . Cma02g00313 . Car02g00193 . . . . . . . . . . . . . . . . . . Cone12ag1281 . . . . . . . . . . . . . . . . Cmo02g00307 . . . . . . Cpe05g01327 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00894 Bma_Chr12 FPKM 12.252193 12.341412 20.848764 19.652187 9.394158 7.578138 10.655795 7.451103 6.672613 8.334058