Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00897 ATGGAATCATTAGATGCAAGGTCCAAACTTGACTTTGAAGACGAGAGCCTTAGTAGTCCTGCATCCATAGCTGCAAAGAAATATTCCTTTCAGGAGTCATTACACATATCCTCATCTACTAGTAGTCCGCAGACCTTTTTCTCTCGAGACATGAGGAAAAGGGTAATTGATAGTATCAAAATCGTCGTCTTTTCTGCAAAAATCAACATTCTCATGCCTTTTGGGCCCCTGGCAATCTTGGTTTATAACTTATCTGGCCATCATGGATGGGTCTTCTTTTTAAGCTTATTAGGGATCATACCTCTGGCCGAGCGTTTGGGTTATGCAACTGAGCAGCTGGCCTGCTACACCGGAGCCACAGTTGGAGGTCTTCTTAATGCTACTTTTGGAAATGCAACGGAATTGATAATATCTATTTATGCATTGAAAAGGGGAATGATCCGTGTTGTTCAACAGTCATTACTTGGCTCTATTCTGTCAAACATGTTACTAGTGCTTGGATGTGCATTCTTTGCTGGTGGACTTGTGTTTTCAAAACGAGAACAAGAATTCACTAAGTCATCTGCTACGGTGAACTCTGGATTGCTGCTAATGGCAGTCATGGGTCTTTTATTTCCGGCAGTTCTTCATTCCACTCATACTGAACTCCATTTTGGAAAGTCTGAGTTGGCTCTTTCGAGGTTTAGCAGCTGCATCATGCTGGTGGCATACGCTGCCTATCTTTTTTTCCAGTTGAGAAATGATAAAAATCTCTATGTCCCAGTTGACGAGGTTCAGGCTGAAGAGAATTCTGATGATGAAGATGCACCTGAGATCTCTAAATGGGAATCGATAATTTGGTTGACTATTTTGACAGCATGGATTTCAGTCCTCTCAGAATATTTAGTAAATGCCATTGAGGGAGCATCAGTGGCAATGAAAATACCAGTGGCATTCATTAGTGTTATCCTGCTCCCAATTGTTGGGAATGCTGCCGAGCATGCAGGTGCTGTAATGTTCGCCATGAAAGACAAGCTTGACATTTCTTTGGGAATTGCCATTGGATCCTCAACCCAGATATCTATGTTCGGGATTCCCTTTTGCGTCGTCATCGGTTGGGCCATAGGTTGTCCGATGGACTTAAATTTTCAACTTTTCGAGACAGCCACCCTTCTCATGACTGTCATAGTCGTAGCCTTCATGCTTCAGGATGGTACCTCGAATTACTTCAAAGGACTAATGCTTATTCTTTGCTACCTGATAGTAGCAGCAAGCTTTTTTGTACATATAGATCCATCTTCAGTAGGTTAG 1290 42.33 MESLDARSKLDFEDESLSSPASIAAKKYSFQESLHISSSTSSPQTFFSRDMRKRVIDSIKIVVFSAKINILMPFGPLAILVYNLSGHHGWVFFLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALKRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVFSKREQEFTKSSATVNSGLLLMAVMGLLFPAVLHSTHTELHFGKSELALSRFSSCIMLVAYAAYLFFQLRNDKNLYVPVDEVQAEENSDDEDAPEISKWESIIWLTILTAWISVLSEYLVNAIEGASVAMKIPVAFISVILLPIVGNAAEHAGAVMFAMKDKLDISLGIAIGSSTQISMFGIPFCVVIGWAIGCPMDLNFQLFETATLLMTVIVVAFMLQDGTSNYFKGLMLILCYLIVAASFFVHIDPSSVG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40332592 40335210 - Bma008226.1 Bma12g00897 92323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00897 429 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 429 IPR004713 GO:0006812|GO:0008324|GO:0016021
Bma12g00897 429 PANTHER VACUOLAR CATION/PROTON EXCHANGER 1 429 - -
Bma12g00897 429 TIGRFAM caca2: calcium/proton exchanger 55 420 - -
Bma12g00897 429 TIGRFAM cax: calcium/proton exchanger 72 420 IPR004798 GO:0006816|GO:0015369
Bma12g00897 429 Pfam Sodium/calcium exchanger protein 90 245 IPR004837 GO:0016021|GO:0055085
Bma12g00897 429 Pfam Sodium/calcium exchanger protein 278 417 IPR004837 GO:0016021|GO:0055085
Bma12g00897 429 Gene3D - 263 421 IPR044880 -
Bma12g00897 429 Gene3D - 118 261 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01790 Bma-Chr1:62308527 Bma12g00897 Bma-Chr12:40332592 1.70E-120 dispersed
Bma09g01003 Bma-Chr9:49521718 Bma12g00897 Bma-Chr12:40332592 0 transposed
Bma14g00662 Bma-Chr14:7159398 Bma12g00897 Bma-Chr12:40332592 3.97E-178 transposed
Bma12g00897 Bma-Chr12:40332592 Bma02g01269 Bma-Chr2:54712794 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00897 K07300 - csv:101215915 685.256