Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00903 TCCGAGAAATCACCAACAATGGCTGCCAAGAATTATCATGTTCGCTCAAACAGCTTGCCCACGAAGCCACACCCAGTCCTCTCCCAGGCCGAGGCGCATTTGAGCAGATTGAGAGCTTCTGAAACAGCCGCTTCTTCTTCTTCTCCGATTGCGTCTCAGAAACTTGGTGGTCTTCTCCATCTTCACGACTCCATTGATGAGTTGCTCGAGTTCACTCTGACTCGACAAGCTCTTCTTGGAGAGTGCAGCGAGGAGAAGAGGATTGCAGCCGAGCTTCTTGAAGGGTCTGTCCGAGTTACAGATCTGTGCGGGATCGCCAGAGATTTGTTGGTCGAGTCGAAGGAGTTTGTACAGGAATTGCAGTCCATTTTGAGGAGGAAAGGAGATAAAATGGGGAATATTGTTTCAAGCGACGACCTTAAAAACTGTTTGGCTGCCAGGAAAATGACCAAGAAAGCAATAAGAAAATCCTGCAAAGCAATAGAAAGTAAGAAAAACCAGACATGGCGAGAAAACTCAGGCGTTCTTGGGCTGTTGAGAGAGGCGGAAGCAGTAACTTTGACCACCGTGGAGCGGTTACTGAGATCGCTAGGAGGGTGGAATCCGCCATTAACGGCGAGAAGCTTTTCATTTGTTTCAAAGCTCGTCAATTCCAGAATGGTCGACGAGGAAGAAAGACAAGAACTCCAAACAGTAGACCTTGCCCTGAGCTCGATCGTGGGCAAGAAGACGATCAAAGAACAGGATCTGCAAAACATTCTTGATAAACTGGAATCCAGCTTCGGAGTTCTTGAGGAAGACGTCGACAGACTCTACAGAATGCTGATCAGAAACAGAGTTTCGCTTCTTAACGTCTTCAACCACTGA 867 47.64 SEKSPTMAAKNYHVRSNSLPTKPHPVLSQAEAHLSRLRASETAASSSSPIASQKLGGLLHLHDSIDELLEFTLTRQALLGECSEEKRIAAELLEGSVRVTDLCGIARDLLVESKEFVQELQSILRRKGDKMGNIVSSDDLKNCLAARKMTKKAIRKSCKAIESKKNQTWRENSGVLGLLREAEAVTLTTVERLLRSLGGWNPPLTARSFSFVSKLVNSRMVDEEERQELQTVDLALSSIVGKKTIKEQDLQNILDKLESSFGVLEEDVDRLYRMLIRNRVSLLNVFNH 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40402501 40403367 + Bma008232.1 Bma12g00903 92329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00903 288 MobiDBLite consensus disorder prediction 1 24 - -
Bma12g00903 288 PANTHER BPS1-LIKE PROTEIN 7 288 - -
Bma12g00903 288 Pfam Protein BPS1 54 285 IPR004320 GO:0048364|GO:0048367
Bma12g00903 288 PANTHER - 7 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00903 - - - jre:109019131 225.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00903 Bma-Chr12:40402501 Bma15g00903 Bma-Chr15:31225094 7.18E-14 dispersed
Bma12g00902 Bma-Chr12:40387495 Bma12g00903 Bma-Chr12:40402501 1.37E-47 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g244 . Blo15g00399 . . . . . Bma12g00903 Cmo19g00799 . . . . . Sed05g2188 . . Bhi05g01617 Tan02g0599 Cmetu01g2685 . . . . Cla02g00372 . . Cco02g0382 Clacu02g0371 Cmu02g0368 Cre02g0701 . . . Cone10ag1225 . Csa07g00160 . Cme01g01176 . . . . . . . . . . . Cma11g01348 . . . . . . . . . . . . . . . . . . . Lsi11g01261 . Chy01g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217