Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00910 ATGGATTTCTCGCTCAAGAAGTCTTTTAAATCCTACGCCTCGTTGAAGAGTGGTAGGAAGGTTTCTGCTAACGGAACTACAGACTGTACTCCTGAACAGCTCCCCATTCTCTTAGACTCTGATTCTGAAGATCGAACTCGTCTTCTTGATCGGCGCCTGTCAATGAGGGACACTGAACTCCCTGTGCGTAGCGAAGTGGTCGTCAAAATCGACGACGGCGATTCTTCCACCGGCTCAAGAACGATGGATTCAAAGAACACTCGCGGGAACATATTCCGGAACTCTAGTTATGATTTCTGGAACGACGTTGAAGACGGAGATAATGCGACTAGTTCTACTGCTAGAACGGGTGATAGCTTTGATTTGGCGCGACAACGGCCAGCTTTGGACGATCCACCTTCGAAGCTGATTGGACAGTTCTTACACAAACAGAAAGCTTCTGGTGATATATCACTGGACATGGATTTAGAAATGGATGAGCTCTATCCAGATAAGACTTTGCCTCCAGTCGCGGAGTCTCCGGTGGTTCGGACATCTAGGGAAATCAAAGTTTCTTTCCAGCCTAATAACGAGGCTAATAACAACGACATGGTTCGAAGGCGGTGCAGAGACTCGTCGGACCAGGAAGAACATGAGAGACAACAGCAACAAGATCGTCGCATGCCTTCCAATGTCGGAGACAAGGACGGTGGAGCCGAGGTTGTAAAGTGCACATCGAATTCTTCATTTCAGAGAGAATATTCATTCCAGAGGAACTCTAGCTTGTTGAAGACGAAAACAAGGTCTAGGTTACTCGACCTTCCTGCAGAGCCGGACCGGAGGTCCGACCGGATGCCTCCGAAGTCGGGGCAAGTGCGATCTGGGATGTTGTCTAGAGTTATGGATGATGAAGAAGATGATCCTTTTCTGGGGGAGGATCTACCAGATGAGTATAAAAGGGCTGATTTCAGCATTTTGACTCTGCTTCAATGGTTGAGTTTGATTCTGATCATAGCAGCTTTAGTTGTCACACTTTATATTCCTTTTTTGAGGCGCAAGAATCTGTGGAAACTCAAACTGTGGAAATGGGAGTTGATGGTTTTCGTTCTGATATGTGGAAGATTGGTATCTGGTTGGGGGATTAGGATAGTTGTGTTCTTCATAGAGAGAAACTTTCTTCTTCGCAAAAGGGTTTTATATTTTGTCTATGGAATTCGAAAAGCTGTCCAGAACTGTCTCTGGCTTGGTCTTGTCTTAATTGCTTGGCATCTGCTCTTTGACAAGAAGGTCGAGAGGGAAACCAACAGTAAAGCACTTGAATATGTAACTAAGATTCTTGTCTGTCTCTTGGTCGGCACCCTACTTTGGTTGGTTAAAACTCTCATAATCAAAGTCCTGGCCTCCTCATTCCATGTCAGCACTTATTTTGATCGAATTCAGGATTCGCTTTTCAACCAATATGTAATCGAAACACTATCTGGATCGCCATTGATTGAGATTCAAAAGATCCAAGAAGACGAAGAAAAGCTCACCAACGAGGTCCGAAAGTTGCAGAATGCAGGGGCTACCGTCCCTCCTGATCTTAAAGAAACCATGAAAGGAGGAAGGGTGATAGGGAGTGGAGGGCTCCAGAAAAGCCCCCGTGGGAAAAGCGAAAAGCTTGCTCGGACAATGTCTAATAAGGGAGATGAAGGTATTACCATTGACCATTTACACAAGCTGAGTCCTAAAAATGTGTCAGCTTGGAAAATGAAGAGATTGATCAAGTTAGTCCGGAATGGGGCTCTTTCTACGCTGGATGAGCAGATAAGGGACTCCACTCAGGGGGATGAGTCTGCTACCAAGATTAGAAGTGAAGTAGAGGCAAAAACTGCAGCCAGGAAAATTTTTCTGAATGTGGCCAAGCATGGAAACAAGTACATCTATCTCGAGGATATAATGCGCTTCATGCCAGAAGATGAAGCTCTGAAAACTTTGAATCTTTTTGAAGGAGCATCTGAGAGCAGGAGAATAAGCAAGGCTTCTTTGAAAAACTGGGTGGTAAATGCGTTTAGAGAGCGCAGGGCCCTGGCTTTGACACTGAACGATACCAAAACAGCCGTGAACAAGCTTCATAAAACGGTGAATGTGGTGGTTGGCATTGTAATCGTGGTCATATGGCTGCTCATACTCGAAATCGCCACCAGCAAATTTCTCCTTTTCGTTAGCTCCCAACTCGTTCTCGTCGCATTCGTATTTGGAAACACGTGCAAGACTGTGTTTGAAGCGATAATCTTTCTATTTTCGATGCATCCGTATGACGTTGGAGATCGGTGCGAAATCGATGGAGTTCAGATGGTTGTAGAAGAAATGAACATCTTAACAACTGTTTTTCTGAGATATGATAACCAGAAGATAATGTATCCGAACAGTGTTCTTGCAACTAAAGCCATACATAACTTCTACCGCAGTCCTGACATGGGAGATGGTGTTGAATTCTGCCTTCATATATCTACTCCTGCAGAAAAGATTGCTCTAATCAGACAGAGAATACTAAGTTACATAGAGAACAAAAAGGAGCATTGGCATCCCAATCCTATGTTTGTAGTGAAGGACTTGGAAGAGTTAAACAGGCTGAGAATAGCAGTCTGGCTGACGCACAGAATGAACCATCAAGACATGGGAGAAAGGTGGACTAGGAGAGCCCTCCTGGTCGAAGAAATGGCAAAAATTTTCAGAGAGCTCGACATCCAGTATCGCCTTTACCCGCTCGACATTAATGTCCGTTCGATGCCTCCCTCGAGCTCCCCTAGTTTTCTATCTAACTAG 2787 44.85 MDFSLKKSFKSYASLKSGRKVSANGTTDCTPEQLPILLDSDSEDRTRLLDRRLSMRDTELPVRSEVVVKIDDGDSSTGSRTMDSKNTRGNIFRNSSYDFWNDVEDGDNATSSTARTGDSFDLARQRPALDDPPSKLIGQFLHKQKASGDISLDMDLEMDELYPDKTLPPVAESPVVRTSREIKVSFQPNNEANNNDMVRRRCRDSSDQEEHERQQQQDRRMPSNVGDKDGGAEVVKCTSNSSFQREYSFQRNSSLLKTKTRSRLLDLPAEPDRRSDRMPPKSGQVRSGMLSRVMDDEEDDPFLGEDLPDEYKRADFSILTLLQWLSLILIIAALVVTLYIPFLRRKNLWKLKLWKWELMVFVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGIRKAVQNCLWLGLVLIAWHLLFDKKVERETNSKALEYVTKILVCLLVGTLLWLVKTLIIKVLASSFHVSTYFDRIQDSLFNQYVIETLSGSPLIEIQKIQEDEEKLTNEVRKLQNAGATVPPDLKETMKGGRVIGSGGLQKSPRGKSEKLARTMSNKGDEGITIDHLHKLSPKNVSAWKMKRLIKLVRNGALSTLDEQIRDSTQGDESATKIRSEVEAKTAARKIFLNVAKHGNKYIYLEDIMRFMPEDEALKTLNLFEGASESRRISKASLKNWVVNAFRERRALALTLNDTKTAVNKLHKTVNVVVGIVIVVIWLLILEIATSKFLLFVSSQLVLVAFVFGNTCKTVFEAIIFLFSMHPYDVGDRCEIDGVQMVVEEMNILTTVFLRYDNQKIMYPNSVLATKAIHNFYRSPDMGDGVEFCLHISTPAEKIALIRQRILSYIENKKEHWHPNPMFVVKDLEELNRLRIAVWLTHRMNHQDMGERWTRRALLVEEMAKIFRELDIQYRLYPLDINVRSMPPSSSPSFLSN 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40544786 40548160 + Bma008241.1 Bma12g00910 92336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00910 928 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 922 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 263 280 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 196 226 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 260 290 - -
Bma12g00910 928 Gene3D - 758 807 IPR023408 -
Bma12g00910 928 SUPERFAMILY Sm-like ribonucleoproteins 748 807 IPR010920 -
Bma12g00910 928 MobiDBLite consensus disorder prediction 186 234 - -
Bma12g00910 928 Coils Coil 493 513 - -
Bma12g00910 928 Pfam Mechanosensitive ion channel 699 904 IPR006685 GO:0016020|GO:0055085
Bma12g00910 928 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 922 IPR016688 -
Bma12g00910 928 MobiDBLite consensus disorder prediction 517 544 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 109 135 - -
Bma12g00910 928 PIRSF Memb_At2g17000 55 927 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00910 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1204.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00265 Bma-Chr4:2189180 Bma12g00910 Bma-Chr12:40544786 1.36E-131 dispersed
Bma04g00266 Bma-Chr4:2202056 Bma12g00910 Bma-Chr12:40544786 7.49E-138 dispersed
Bma11g00595 Bma-Chr11:8941397 Bma12g00910 Bma-Chr12:40544786 0 dispersed
Bma11g00602 Bma-Chr11:9009776 Bma12g00910 Bma-Chr12:40544786 4.90E-178 dispersed
Bma04g01222 Bma-Chr4:35241068 Bma12g00910 Bma-Chr12:40544786 7.57E-07 transposed
Bma12g00910 Bma-Chr12:40544786 Bma03g00619 Bma-Chr3:5110518 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01199 . 109 558 Mechanosensitive Ion Channel Family AT4G00290 57.0 4.0e-130 461.8
Bma06g01198 . 191 453 Mechanosensitive Ion Channel Family AT4G00290 55.8 1.6e-78 290.4
Bma02g00115 . 256 813 Mechanosensitive Ion Channel Family AT5G10490 58.3 3.5e-169 592.0
Bma01g01375 . 11 511 Mechanosensitive Ion Channel Family AT5G10490 59.5 3.5e-153 538.9
Bma02g00115 . 257 796 Mechanosensitive Ion Channel Family AT1G58200 55.7 4.8e-158 555.1
Bma01g01375 . 11 518 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-150 528.5
Bma12g00910 . 63 921 Mechanosensitive Ion Channel Family AT1G53470 54.2 2.9e-248 855.1
Bma03g00619 . 73 896 Mechanosensitive Ion Channel Family AT1G53470 55.9 6.0e-246 847.4
Bma12g00910 . 63 924 Mechanosensitive Ion Channel Family AT3G14810 52.6 3.0e-234 808.5
Bma03g00619 . 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.6 2.1e-227 785.8
Bma12g00910 . 63 922 Mechanosensitive Ion Channel Family AT1G78610 60.9 2.1e-280 961.8
Bma03g00619 . 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 2.5e-260 895.2
Bma12g00910 . 228 918 Mechanosensitive Ion Channel Family AT2G17000 59.8 3.3e-225 778.5
Bma03g00619 . 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.9 9.6e-225 776.9
Bma04g00115 . 16 775 Mechanosensitive Ion Channel Family AT5G19520 50.2 1.4e-195 679.9
Bma04g00115 . 61 775 Mechanosensitive Ion Channel Family AT5G12080 56.1 1.2e-210 729.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00910 Bma_Chr12 FPKM 1.718823 2.013976 5.917662 5.765345 5.508711 4.945941 5.876756 11.387516 10.695653 11.394895