Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00910 ATGGATTTCTCGCTCAAGAAGTCTTTTAAATCCTACGCCTCGTTGAAGAGTGGTAGGAAGGTTTCTGCTAACGGAACTACAGACTGTACTCCTGAACAGCTCCCCATTCTCTTAGACTCTGATTCTGAAGATCGAACTCGTCTTCTTGATCGGCGCCTGTCAATGAGGGACACTGAACTCCCTGTGCGTAGCGAAGTGGTCGTCAAAATCGACGACGGCGATTCTTCCACCGGCTCAAGAACGATGGATTCAAAGAACACTCGCGGGAACATATTCCGGAACTCTAGTTATGATTTCTGGAACGACGTTGAAGACGGAGATAATGCGACTAGTTCTACTGCTAGAACGGGTGATAGCTTTGATTTGGCGCGACAACGGCCAGCTTTGGACGATCCACCTTCGAAGCTGATTGGACAGTTCTTACACAAACAGAAAGCTTCTGGTGATATATCACTGGACATGGATTTAGAAATGGATGAGCTCTATCCAGATAAGACTTTGCCTCCAGTCGCGGAGTCTCCGGTGGTTCGGACATCTAGGGAAATCAAAGTTTCTTTCCAGCCTAATAACGAGGCTAATAACAACGACATGGTTCGAAGGCGGTGCAGAGACTCGTCGGACCAGGAAGAACATGAGAGACAACAGCAACAAGATCGTCGCATGCCTTCCAATGTCGGAGACAAGGACGGTGGAGCCGAGGTTGTAAAGTGCACATCGAATTCTTCATTTCAGAGAGAATATTCATTCCAGAGGAACTCTAGCTTGTTGAAGACGAAAACAAGGTCTAGGTTACTCGACCTTCCTGCAGAGCCGGACCGGAGGTCCGACCGGATGCCTCCGAAGTCGGGGCAAGTGCGATCTGGGATGTTGTCTAGAGTTATGGATGATGAAGAAGATGATCCTTTTCTGGGGGAGGATCTACCAGATGAGTATAAAAGGGCTGATTTCAGCATTTTGACTCTGCTTCAATGGTTGAGTTTGATTCTGATCATAGCAGCTTTAGTTGTCACACTTTATATTCCTTTTTTGAGGCGCAAGAATCTGTGGAAACTCAAACTGTGGAAATGGGAGTTGATGGTTTTCGTTCTGATATGTGGAAGATTGGTATCTGGTTGGGGGATTAGGATAGTTGTGTTCTTCATAGAGAGAAACTTTCTTCTTCGCAAAAGGGTTTTATATTTTGTCTATGGAATTCGAAAAGCTGTCCAGAACTGTCTCTGGCTTGGTCTTGTCTTAATTGCTTGGCATCTGCTCTTTGACAAGAAGGTCGAGAGGGAAACCAACAGTAAAGCACTTGAATATGTAACTAAGATTCTTGTCTGTCTCTTGGTCGGCACCCTACTTTGGTTGGTTAAAACTCTCATAATCAAAGTCCTGGCCTCCTCATTCCATGTCAGCACTTATTTTGATCGAATTCAGGATTCGCTTTTCAACCAATATGTAATCGAAACACTATCTGGATCGCCATTGATTGAGATTCAAAAGATCCAAGAAGACGAAGAAAAGCTCACCAACGAGGTCCGAAAGTTGCAGAATGCAGGGGCTACCGTCCCTCCTGATCTTAAAGAAACCATGAAAGGAGGAAGGGTGATAGGGAGTGGAGGGCTCCAGAAAAGCCCCCGTGGGAAAAGCGAAAAGCTTGCTCGGACAATGTCTAATAAGGGAGATGAAGGTATTACCATTGACCATTTACACAAGCTGAGTCCTAAAAATGTGTCAGCTTGGAAAATGAAGAGATTGATCAAGTTAGTCCGGAATGGGGCTCTTTCTACGCTGGATGAGCAGATAAGGGACTCCACTCAGGGGGATGAGTCTGCTACCAAGATTAGAAGTGAAGTAGAGGCAAAAACTGCAGCCAGGAAAATTTTTCTGAATGTGGCCAAGCATGGAAACAAGTACATCTATCTCGAGGATATAATGCGCTTCATGCCAGAAGATGAAGCTCTGAAAACTTTGAATCTTTTTGAAGGAGCATCTGAGAGCAGGAGAATAAGCAAGGCTTCTTTGAAAAACTGGGTGGTAAATGCGTTTAGAGAGCGCAGGGCCCTGGCTTTGACACTGAACGATACCAAAACAGCCGTGAACAAGCTTCATAAAACGGTGAATGTGGTGGTTGGCATTGTAATCGTGGTCATATGGCTGCTCATACTCGAAATCGCCACCAGCAAATTTCTCCTTTTCGTTAGCTCCCAACTCGTTCTCGTCGCATTCGTATTTGGAAACACGTGCAAGACTGTGTTTGAAGCGATAATCTTTCTATTTTCGATGCATCCGTATGACGTTGGAGATCGGTGCGAAATCGATGGAGTTCAGATGGTTGTAGAAGAAATGAACATCTTAACAACTGTTTTTCTGAGATATGATAACCAGAAGATAATGTATCCGAACAGTGTTCTTGCAACTAAAGCCATACATAACTTCTACCGCAGTCCTGACATGGGAGATGGTGTTGAATTCTGCCTTCATATATCTACTCCTGCAGAAAAGATTGCTCTAATCAGACAGAGAATACTAAGTTACATAGAGAACAAAAAGGAGCATTGGCATCCCAATCCTATGTTTGTAGTGAAGGACTTGGAAGAGTTAAACAGGCTGAGAATAGCAGTCTGGCTGACGCACAGAATGAACCATCAAGACATGGGAGAAAGGTGGACTAGGAGAGCCCTCCTGGTCGAAGAAATGGCAAAAATTTTCAGAGAGCTCGACATCCAGTATCGCCTTTACCCGCTCGACATTAATGTCCGTTCGATGCCTCCCTCGAGCTCCCCTAGTTTTCTATCTAACTAG 2787 44.85 MDFSLKKSFKSYASLKSGRKVSANGTTDCTPEQLPILLDSDSEDRTRLLDRRLSMRDTELPVRSEVVVKIDDGDSSTGSRTMDSKNTRGNIFRNSSYDFWNDVEDGDNATSSTARTGDSFDLARQRPALDDPPSKLIGQFLHKQKASGDISLDMDLEMDELYPDKTLPPVAESPVVRTSREIKVSFQPNNEANNNDMVRRRCRDSSDQEEHERQQQQDRRMPSNVGDKDGGAEVVKCTSNSSFQREYSFQRNSSLLKTKTRSRLLDLPAEPDRRSDRMPPKSGQVRSGMLSRVMDDEEDDPFLGEDLPDEYKRADFSILTLLQWLSLILIIAALVVTLYIPFLRRKNLWKLKLWKWELMVFVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGIRKAVQNCLWLGLVLIAWHLLFDKKVERETNSKALEYVTKILVCLLVGTLLWLVKTLIIKVLASSFHVSTYFDRIQDSLFNQYVIETLSGSPLIEIQKIQEDEEKLTNEVRKLQNAGATVPPDLKETMKGGRVIGSGGLQKSPRGKSEKLARTMSNKGDEGITIDHLHKLSPKNVSAWKMKRLIKLVRNGALSTLDEQIRDSTQGDESATKIRSEVEAKTAARKIFLNVAKHGNKYIYLEDIMRFMPEDEALKTLNLFEGASESRRISKASLKNWVVNAFRERRALALTLNDTKTAVNKLHKTVNVVVGIVIVVIWLLILEIATSKFLLFVSSQLVLVAFVFGNTCKTVFEAIIFLFSMHPYDVGDRCEIDGVQMVVEEMNILTTVFLRYDNQKIMYPNSVLATKAIHNFYRSPDMGDGVEFCLHISTPAEKIALIRQRILSYIENKKEHWHPNPMFVVKDLEELNRLRIAVWLTHRMNHQDMGERWTRRALLVEEMAKIFRELDIQYRLYPLDINVRSMPPSSSPSFLSN 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40544786 40548160 + Bma008241.1 Bma12g00910 92336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00910 928 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 922 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 263 280 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 196 226 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 260 290 - -
Bma12g00910 928 Gene3D - 758 807 IPR023408 -
Bma12g00910 928 SUPERFAMILY Sm-like ribonucleoproteins 748 807 IPR010920 -
Bma12g00910 928 MobiDBLite consensus disorder prediction 186 234 - -
Bma12g00910 928 Coils Coil 493 513 - -
Bma12g00910 928 Pfam Mechanosensitive ion channel 699 904 IPR006685 GO:0016020|GO:0055085
Bma12g00910 928 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 922 IPR016688 -
Bma12g00910 928 MobiDBLite consensus disorder prediction 517 544 - -
Bma12g00910 928 MobiDBLite consensus disorder prediction 109 135 - -
Bma12g00910 928 PIRSF Memb_At2g17000 55 927 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00265 Bma-Chr4:2189180 Bma12g00910 Bma-Chr12:40544786 1.36E-131 dispersed
Bma04g00266 Bma-Chr4:2202056 Bma12g00910 Bma-Chr12:40544786 7.49E-138 dispersed
Bma11g00595 Bma-Chr11:8941397 Bma12g00910 Bma-Chr12:40544786 0 dispersed
Bma11g00602 Bma-Chr11:9009776 Bma12g00910 Bma-Chr12:40544786 4.90E-178 dispersed
Bma04g01222 Bma-Chr4:35241068 Bma12g00910 Bma-Chr12:40544786 7.57E-07 transposed
Bma12g00910 Bma-Chr12:40544786 Bma03g00619 Bma-Chr3:5110518 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00910 K22048 - csv:101210264 1204.89