Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00917 ATGAACTTTCTGAGCGCCTGCTTTTTTCCGTCATCGGAGCCGGGATCGGATTCCAGGGGCCGGCAGGACGGCCTCCTCTGGTACAAAGATAGTGGGCAACACTTGAACGGAGAATTTTCCATGGCTGTTGTTCAGGCCAATAGTTTACTTGAGGATCAGTGTCAGATTGAATCTGGTTGTTTGAGTTCTAACGAGTTCGGCCCGTTTGGTACTTTCGTCGGAATATATGACGGCCATGGCGGCCCCGAAACTTCCCGATATATCAACGACCAACTCTTTAAACACCTTAAGAGATTCACTTCGGAGCAAAAATCAATGTCGGTGGATGTAATCAGGAAGGCATTTCAAGCTACCGAAGACGGGTTCATGTCCTTAGTTTCCAAAAAATGGCAGATGAATCCTCAATTTGCAGCCGTTGGATCGTGTTGTCTAGTCGGTATTGTGTCTAGTGGGACGCTTTACATCGCCAACCTCGGCGATTCTCGAGCCGTCCTCGGAAGAGCAGTGAAAGCCACCGGAGAAATTCTATCAATTCAATTATCCGCAGAGCATAATGCCGCCATCGACTCTGTAAGACAAGAGCTTCGAGCTTCCCATCCCCACGACCCACACATTGTTCTTCTTAAGCATAATGTATGGCGAGTTAAGGGTCTTATTCAGATCTCTCGAGCCATCGGCGATGCATATCTAAAGAAAGCCGAGTTCAACAGGGAGCCCCTATATGCAAAGTTACGCCTCCGCGAACCTTTCAAGAATCCCATTTTGAGTGCCGAACCGTCGATTTCGGTGCTCCAATTGGAACCAAATGATCGATTTATCATATTTGCATCGGACGGTCTTTGGGAACACCTAAGCAATCAAGAGGCTGTCAATATCGTCGAAAATCATTCTCGTAGCGGAATAGCGAAGTGTCTAGTGAAAGCTGCACTACAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCCGACTTGAAGAAGATCGACAGAGGTGTACGGCGACATTTCCACGACGACATATCAGTGATCGTCTTGTTCCTGGACTCAAACCTGGTGAGTAGGGCTAGCTCGGTGGAGTCTCCCACGATATCGATTAAAGGTGGTGGAATCAACCTACCTTCTAAATCATTGGCTCATTGCACTACGCCTATAGCAACTGGCACTGCCTGA 1167 47.56 MNFLSACFFPSSEPGSDSRGRQDGLLWYKDSGQHLNGEFSMAVVQANSLLEDQCQIESGCLSSNEFGPFGTFVGIYDGHGGPETSRYINDQLFKHLKRFTSEQKSMSVDVIRKAFQATEDGFMSLVSKKWQMNPQFAAVGSCCLVGIVSSGTLYIANLGDSRAVLGRAVKATGEILSIQLSAEHNAAIDSVRQELRASHPHDPHIVLLKHNVWRVKGLIQISRAIGDAYLKKAEFNREPLYAKLRLREPFKNPILSAEPSISVLQLEPNDRFIIFASDGLWEHLSNQEAVNIVENHSRSGIAKCLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVLFLDSNLVSRASSVESPTISIKGGGINLPSKSLAHCTTPIATGTA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40612620 40614365 - Bma008248.1 Bma12g00917 92343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00917 388 ProSiteProfiles PPM-type phosphatase domain profile. 38 346 IPR001932 -
Bma12g00917 388 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Bma12g00917 388 SUPERFAMILY PP2C-like 47 347 IPR036457 -
Bma12g00917 388 CDD PP2Cc 39 346 IPR001932 -
Bma12g00917 388 SMART PP2C_4 30 344 IPR001932 -
Bma12g00917 388 PANTHER ALPHABET, ISOFORM E-RELATED 2 377 - -
Bma12g00917 388 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 2 377 - -
Bma12g00917 388 Pfam Protein phosphatase 2C 71 315 IPR001932 -
Bma12g00917 388 Gene3D - 27 356 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00616 Bma12g00917 CCT
Bma08g00611 Bma12g00917 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00947 Bma-Chr3:10028382 Bma12g00917 Bma-Chr12:40612620 0 dispersed
Bma08g00611 Bma-Chr8:38538594 Bma12g00917 Bma-Chr12:40612620 0 dispersed
Bma04g01653 Bma-Chr4:52389748 Bma12g00917 Bma-Chr12:40612620 3.52E-158 transposed
Bma05g00995 Bma-Chr5:48448068 Bma12g00917 Bma-Chr12:40612620 1.79E-142 transposed
Bma04g01123 Bma-Chr4:27103114 Bma12g00917 Bma-Chr12:40612620 5.63E-115 transposed
Bma08g00966 Bma-Chr8:48642062 Bma12g00917 Bma-Chr12:40612620 5.79E-180 transposed
Bma12g00917 Bma-Chr12:40612620 Bma03g00616 Bma-Chr3:5088697 0 wgd
Bma12g00917 Bma-Chr12:40612620 Bma08g00745 Bma-Chr8:43881409 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00917 - K01102 csv:101221640 629.787