Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00917 | ATGAACTTTCTGAGCGCCTGCTTTTTTCCGTCATCGGAGCCGGGATCGGATTCCAGGGGCCGGCAGGACGGCCTCCTCTGGTACAAAGATAGTGGGCAACACTTGAACGGAGAATTTTCCATGGCTGTTGTTCAGGCCAATAGTTTACTTGAGGATCAGTGTCAGATTGAATCTGGTTGTTTGAGTTCTAACGAGTTCGGCCCGTTTGGTACTTTCGTCGGAATATATGACGGCCATGGCGGCCCCGAAACTTCCCGATATATCAACGACCAACTCTTTAAACACCTTAAGAGATTCACTTCGGAGCAAAAATCAATGTCGGTGGATGTAATCAGGAAGGCATTTCAAGCTACCGAAGACGGGTTCATGTCCTTAGTTTCCAAAAAATGGCAGATGAATCCTCAATTTGCAGCCGTTGGATCGTGTTGTCTAGTCGGTATTGTGTCTAGTGGGACGCTTTACATCGCCAACCTCGGCGATTCTCGAGCCGTCCTCGGAAGAGCAGTGAAAGCCACCGGAGAAATTCTATCAATTCAATTATCCGCAGAGCATAATGCCGCCATCGACTCTGTAAGACAAGAGCTTCGAGCTTCCCATCCCCACGACCCACACATTGTTCTTCTTAAGCATAATGTATGGCGAGTTAAGGGTCTTATTCAGATCTCTCGAGCCATCGGCGATGCATATCTAAAGAAAGCCGAGTTCAACAGGGAGCCCCTATATGCAAAGTTACGCCTCCGCGAACCTTTCAAGAATCCCATTTTGAGTGCCGAACCGTCGATTTCGGTGCTCCAATTGGAACCAAATGATCGATTTATCATATTTGCATCGGACGGTCTTTGGGAACACCTAAGCAATCAAGAGGCTGTCAATATCGTCGAAAATCATTCTCGTAGCGGAATAGCGAAGTGTCTAGTGAAAGCTGCACTACAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCCGACTTGAAGAAGATCGACAGAGGTGTACGGCGACATTTCCACGACGACATATCAGTGATCGTCTTGTTCCTGGACTCAAACCTGGTGAGTAGGGCTAGCTCGGTGGAGTCTCCCACGATATCGATTAAAGGTGGTGGAATCAACCTACCTTCTAAATCATTGGCTCATTGCACTACGCCTATAGCAACTGGCACTGCCTGA | 1167 | 47.56 | MNFLSACFFPSSEPGSDSRGRQDGLLWYKDSGQHLNGEFSMAVVQANSLLEDQCQIESGCLSSNEFGPFGTFVGIYDGHGGPETSRYINDQLFKHLKRFTSEQKSMSVDVIRKAFQATEDGFMSLVSKKWQMNPQFAAVGSCCLVGIVSSGTLYIANLGDSRAVLGRAVKATGEILSIQLSAEHNAAIDSVRQELRASHPHDPHIVLLKHNVWRVKGLIQISRAIGDAYLKKAEFNREPLYAKLRLREPFKNPILSAEPSISVLQLEPNDRFIIFASDGLWEHLSNQEAVNIVENHSRSGIAKCLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVLFLDSNLVSRASSVESPTISIKGGGINLPSKSLAHCTTPIATGTA | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 40612620 | 40614365 | - | Bma008248.1 | Bma12g00917 | 92343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00917 | 388 | ProSiteProfiles | PPM-type phosphatase domain profile. | 38 | 346 | IPR001932 | - | |
Bma12g00917 | 388 | ProSitePatterns | PPM-type phosphatase domain signature. | 72 | 80 | IPR000222 | GO:0043169 | |
Bma12g00917 | 388 | SUPERFAMILY | PP2C-like | 47 | 347 | IPR036457 | - | |
Bma12g00917 | 388 | CDD | PP2Cc | 39 | 346 | IPR001932 | - | |
Bma12g00917 | 388 | SMART | PP2C_4 | 30 | 344 | IPR001932 | - | |
Bma12g00917 | 388 | PANTHER | ALPHABET, ISOFORM E-RELATED | 2 | 377 | - | - | |
Bma12g00917 | 388 | PANTHER | PROTEIN PHOSPHATASE 2C 60-RELATED | 2 | 377 | - | - | |
Bma12g00917 | 388 | Pfam | Protein phosphatase 2C | 71 | 315 | IPR001932 | - | |
Bma12g00917 | 388 | Gene3D | - | 27 | 356 | IPR036457 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma03g00616 | Bma12g00917 | CCT | |
Bma08g00611 | Bma12g00917 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00947 | Bma-Chr3:10028382 | Bma12g00917 | Bma-Chr12:40612620 | 0 | dispersed | |
Bma08g00611 | Bma-Chr8:38538594 | Bma12g00917 | Bma-Chr12:40612620 | 0 | dispersed | |
Bma04g01653 | Bma-Chr4:52389748 | Bma12g00917 | Bma-Chr12:40612620 | 3.52E-158 | transposed | |
Bma05g00995 | Bma-Chr5:48448068 | Bma12g00917 | Bma-Chr12:40612620 | 1.79E-142 | transposed | |
Bma04g01123 | Bma-Chr4:27103114 | Bma12g00917 | Bma-Chr12:40612620 | 5.63E-115 | transposed | |
Bma08g00966 | Bma-Chr8:48642062 | Bma12g00917 | Bma-Chr12:40612620 | 5.79E-180 | transposed | |
Bma12g00917 | Bma-Chr12:40612620 | Bma03g00616 | Bma-Chr3:5088697 | 0 | wgd | |
Bma12g00917 | Bma-Chr12:40612620 | Bma08g00745 | Bma-Chr8:43881409 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00917 | - | K01102 | csv:101221640 | 629.787 |