Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00919 ATGACAGTTGAAGAGGAATCTAAGGTGGTTGAGAAGAAGAACAAAGTACTTGTTGGGATTCGAATAGATAGCAATAGCAGAGATTTGCTCAACTGGGCTATTGTTAAAGTCGCTAATCCTGGAGATTGTGTTCTGGCAATTTACGTTTGTCAAAATTCCGGGCAGGCTGCAAAGGAGAAGCCACGGTTGGATCTTTTTTTAGAAGATTATGAAGACATGTGCGATAACAACAAGGTTAGTCTGGTGGGTCAGATCTTCGCTGGAGATTCGGTTAGAAAGGTTCTGGTAAGGGAGGCAAAGAGCCAAAGTGCTTTAGCTCTTGTTGTGGGGACGAGCAAACCAAGTATTATTTGGGGTTGGTCTTCAACGACTAGATACTGTGTTAAGCAATTGCATCTAACCACTGATGTTTTGACCCTCTATAATGGCAAAATTGTCTATGGAAGGTCCACCAAAAATCAACCACCAGGCTTTATTGAAGACCCCAAATTGATTATAAATCAAGCCGAGGAGTCAAACCAGTCGGAATTTGGTGATTCTGAGGGGAAAGAACTTGAATGTAAGAATTTTCATATGAGAGTTGATTCTCTTATGGAGCTAGACGCTGGAGAGAAGAGGCTCGGTTGGCCTTTACTTCTCAGGACTGATTCAATAATTTCACAAACCCCAAATGTAAGAGACATGTCTGTTGTCCAATGGGCATTGAGCTTGCCGAATCGGTCACCACAGCTTAGTCCTCAGAACTCAACTCTAAGAGAGGAAGCCCTTGGATTTCAGGATGAGAAGCCTGAGATGAGTGGTTTATCTACTTTGAGTGAGCCACCAGAAAACTTGGACTCTTTCCTGAAAACAATCTCATCTGTTTGCACATGGTTTAGCCCAGATCTACTCAATACCTCGACATCTCAATTTGCGTCAGAAAACTTGATTGGGAAAGGAGGTTGCAACCGAGTGTACAAGGGAATTCTTCACAACGGGAAACAAGTTGCAGTAAAAGTAATGAACCCATCGAAAGAGGCATGGAAGGCATATGCTCGCGAAGTCAATATCATTTCTGCGTTGGATCACAAACATGTCACACCTCTGCTGGGTGTTAGCATTGAAGACAATGCTTTGATCTCTGTATATGACTATTTTCCTAAAGGAAGCTTAGAAGAAAATCTTCATGGTAAGAACATGGAAAAATGTTCACTTTCATGGGAGGTGAGGTTCAATATAGCCATTGGAATTGCAGAAGCTCTAAACTATTTGCACAACGAATGTTCAAAGCCAGTTATTCATCGAGATGTCAAGTCTTCAAACATACTTCTCAGCGACCGATTTGAGCCACAGTTATCTGATTTTGGACTTGCAATATGGGGACCCACAACGTCCTCCTTTCAAATAGAAGACGATATATTAGGAACATTTGGCTATCTTGCTCCTGAGTACTTCATGTATGGAAAAGTGAGTGATAAGATTGATGTCTATGCTTTTGGTGTTGTGCTACTGGAGTTATTATCAGGGAAGAAACCAATCTGCTCTGATACCCATAAAAAACAGGAGAGCCTAGTCATGTGGGCAAAACCAATAATTGAAAGAGGGGATATAATCAGCCTAGTGGACGCAAATTTGAATGGTAATTTCGACAATGCCCAAATGAAAAGAATGATTCTCGGGGCGAAACTATGCATCACAAGAGCAGCCCGTCTTCGTCCGAGTATTAGTGAGATATTGAGGCTCTTAAAAGGGGAGAAAGATGTTGAAAATTGGACGATCCTTGGAGACGGATTGGAAGAGGTGGAAAACAGAGATGATGAAGTATATCCAAATTCAAGCGCAGATTTACATTTGAGTATGGCATTGCATGATGTTGATTATGATACTACTTCATCAGATGGTGTGGAGCAGAGAAATAGCGTCTCTCTGGAAGATTACTTCAAAACAAGATGGAGCCGATCATCAAGCTTTGATTAG 1956 41.56 MTVEEESKVVEKKNKVLVGIRIDSNSRDLLNWAIVKVANPGDCVLAIYVCQNSGQAAKEKPRLDLFLEDYEDMCDNNKVSLVGQIFAGDSVRKVLVREAKSQSALALVVGTSKPSIIWGWSSTTRYCVKQLHLTTDVLTLYNGKIVYGRSTKNQPPGFIEDPKLIINQAEESNQSEFGDSEGKELECKNFHMRVDSLMELDAGEKRLGWPLLLRTDSIISQTPNVRDMSVVQWALSLPNRSPQLSPQNSTLREEALGFQDEKPEMSGLSTLSEPPENLDSFLKTISSVCTWFSPDLLNTSTSQFASENLIGKGGCNRVYKGILHNGKQVAVKVMNPSKEAWKAYAREVNIISALDHKHVTPLLGVSIEDNALISVYDYFPKGSLEENLHGKNMEKCSLSWEVRFNIAIGIAEALNYLHNECSKPVIHRDVKSSNILLSDRFEPQLSDFGLAIWGPTTSSFQIEDDILGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELLSGKKPICSDTHKKQESLVMWAKPIIERGDIISLVDANLNGNFDNAQMKRMILGAKLCITRAARLRPSISEILRLLKGEKDVENWTILGDGLEEVENRDDEVYPNSSADLHLSMALHDVDYDTTSSDGVEQRNSVSLEDYFKTRWSRSSSFD 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40710939 40713668 - Bma008253.2 Bma12g00919 92345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00919 651 Gene3D Transferase(Phosphotransferase) domain 1 379 589 - -
Bma12g00919 651 Gene3D HUPs 2 139 IPR014729 -
Bma12g00919 651 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 12 626 - -
Bma12g00919 651 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 132 - -
Bma12g00919 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Bma12g00919 651 SUPERFAMILY Protein kinase-like (PK-like) 284 575 IPR011009 -
Bma12g00919 651 SMART serkin_6 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00919 651 PANTHER OS08G0249100 PROTEIN 12 626 - -
Bma12g00919 651 ProSiteProfiles Protein kinase domain profile. 304 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00919 651 Pfam Protein kinase domain 306 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00919 651 Gene3D Phosphorylase Kinase; domain 1 274 378 - -
Bma12g00919 651 CDD USP_Like 15 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00919 - - - jre:108993318 780.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00367 Bma12g00919 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00505 Bma-Chr2:8096629 Bma12g00919 Bma-Chr12:40710939 3.25E-69 dispersed
Bma05g00367 Bma-Chr5:11514004 Bma12g00919 Bma-Chr12:40710939 0 dispersed
Bma09g00438 Bma-Chr9:38216601 Bma12g00919 Bma-Chr12:40710939 5.35E-134 dispersed
Bma12g00906 Bma-Chr12:40493103 Bma12g00919 Bma-Chr12:40710939 5.55E-61 dispersed
Bma12g00919 Bma-Chr12:40710939 Bma15g00776 Bma-Chr15:16448120 6.96E-120 dispersed
Bma12g00919 Bma-Chr12:40710939 Bma02g00200 Bma-Chr2:2169507 5.50E-148 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66826 PF00069 Pkinase 9.40E-42 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00919 Bma_Chr12 FPKM 0.0 0.0 0.269262 0.290804 0.0 0.0 0.020011 0.193939 0.263299 0.49354