Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00932 ATGGAAACTCCGCAAGCTGGATCCGAGAAGGACAAAGCAGCCAATTCTTTGTCCTCATCCTCTTCTCCGGCATCGGTTGTCTCCAACTTCTGGAAAGATTTTGATTTAGAGAAAGAGAAAGGAGTGTTGGATGAGCAAGGTCTTCGGATAGCTGAAAACCAAGAAAATAGCTTGAAAAATAGACGAAAGCTTGCAGAAAGTACAAGAGATTTCAGGAAAGCTTCGCCAGAGGAGAAGTTAAATTTATTCAATTCTCTTCTTAAATGTTACCAAGAAGAAGTTGATAACATTACCAAGCGAGCGAAGTTTGGAGAAAATGCTTTCCTTAACATCTATCAAAAACTTTATGAGGCTCCAGATCCTTATCCCGCTATTGCTTCAATTTCTGAGCAAGAGGCTAAATTATCTGACATGGAGTCTGAAAATCGGAAAATGAAAGTTGAGCTTGAGGAATTTAGAACAGAATCTTCTCATCTAAAAAATCAACAGGCAACAATAAGGAGACTTGAAGAACGCAATCGACAATTGGAGCAACAGATGGAAGAAAAAATCAAAGAGATAGTGGAGATCAGGCAACGCAGTTTGGCAGAAGAGAATCAGAAAACATTTGATGTTTTGAAAGAAAGGGAGCAATTGCTACAGGATCAATTAAGACAAGCTAAAGAAAGCGTCTCAAACATGCAAAAGATACATGAACTTGCTCAAAGTCAATTATTTGAACTTCGGGCTCAGTCAGACGAAGAGAGGGCAGCTAAACAATCAGAAGTCAATCTTCTGATGGATGAAGTTGAGCGGGCTCAAACAAGGCTTCTAAGCCTTGAAAGGGAGAAGGGACTTCTGCGTTCTCAGTTACAATCTGCTAATGAAGATGGTGGAAATAAGAAAAGTGATAATTTAGACTCCAGCAGTTTCCTCGAGAACTCTCTGAGTGCCAAAGAGAAGATTATCTCTGAATTAAACATGGAACTTCACAGCATTGAGACAACCTTGTCAAGTGAAAGGGAGCAACACATAAATGAAATAAAGATATTGAATGGAATTATAAATGAAAAGGAAACTGCTCTTGATGAAATGAAGAAAGAGCTTCAAGGTAGGCCAACATCAAAATTGGTTGATGACTTGAGAAAAAAAGTTAAAATTCTGCAGGCTGTGGGTTATAATTCGATTGAGGCTGAAGATTGGGAAGCAGCTACTAGTGCTGAAGAGATGAGCAAAATGGAGTCTCTTCTTCTTGATAAAAACAGAAAAATGGAACATGAACTTACACAATTGAAGGTTAAACTTTCTGAAAAAGCATCTTTGCTGGAAACAGCTGAAACCAAGATTTCTGAACTCTCAGAGAAGGTTGCTGAACAACAGAAGTTAATACAGAAGTTGGAAGATGATATACTAAAGGGTTATAGCTCCAAAGATCAAAAAGGCACTCTCTTTGATGACTGGAATCTTTCTGAAGTCAGGGGGGTGGACCTGCCTGAGAATGCAGATAGAAAAAATCCGTCTACAGATCAAGATCAAAGTTCAATGCTTAAGGTAATTTGCAATCAGCGGGATAGGTTTAGGACACGCTTGCGAGAGACAGAAGAGGAAATAAGGCAATTGAAAGAGAAGATAGGGCATCTAACTGTGGAATTGGAAAGGACGAAAGCAGATAATGTCAAACTTTATGGAAAGATTCGTTATGTCCAGGACTATAATCTTGACAAAGTAGTTTCTAGAGGATCAAAGAAGCATGCAGAGGATCTTGAAGGCGGTTTTGCATCAGACGTTGAATCCAAGTATAAAAAAATATACGAAGAAGATATTAATCCTTTTGCTGCATTTTCGAAAAGGGAAAGGGATCAAAGATACAAGGAGTTGGGTATCAGGGATAAAATCACGCTCAGTAGTGGGCGATTTCTCTTAGGAAACAAATATGCTCGAACATTTGCATTCTTCTACACTATCGGATTGCATATCTTAGTGTTCACATGCCTATATCGAATGTCGGCTCTGAGCCATCTCAGGTAA 2007 38.96 METPQAGSEKDKAANSLSSSSSPASVVSNFWKDFDLEKEKGVLDEQGLRIAENQENSLKNRRKLAESTRDFRKASPEEKLNLFNSLLKCYQEEVDNITKRAKFGENAFLNIYQKLYEAPDPYPAIASISEQEAKLSDMESENRKMKVELEEFRTESSHLKNQQATIRRLEERNRQLEQQMEEKIKEIVEIRQRSLAEENQKTFDVLKEREQLLQDQLRQAKESVSNMQKIHELAQSQLFELRAQSDEERAAKQSEVNLLMDEVERAQTRLLSLEREKGLLRSQLQSANEDGGNKKSDNLDSSSFLENSLSAKEKIISELNMELHSIETTLSSEREQHINEIKILNGIINEKETALDEMKKELQGRPTSKLVDDLRKKVKILQAVGYNSIEAEDWEAATSAEEMSKMESLLLDKNRKMEHELTQLKVKLSEKASLLETAETKISELSEKVAEQQKLIQKLEDDILKGYSSKDQKGTLFDDWNLSEVRGVDLPENADRKNPSTDQDQSSMLKVICNQRDRFRTRLRETEEEIRQLKEKIGHLTVELERTKADNVKLYGKIRYVQDYNLDKVVSRGSKKHAEDLEGGFASDVESKYKKIYEEDINPFAAFSKRERDQRYKELGIRDKITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSHLR 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40998918 41008488 + Bma008271.1 Bma12g00932 92358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00932 668 MobiDBLite consensus disorder prediction 1 25 - -
Bma12g00932 668 Coils Coil 341 361 - -
Bma12g00932 668 PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED 24 666 - -
Bma12g00932 668 Pfam CASP C terminal 437 664 IPR012955 GO:0006891|GO:0030173
Bma12g00932 668 Coils Coil 203 230 - -
Bma12g00932 668 Coils Coil 48 68 - -
Bma12g00932 668 Coils Coil 249 290 - -
Bma12g00932 668 Coils Coil 128 193 - -
Bma12g00932 668 Coils Coil 509 550 - -
Bma12g00932 668 PANTHER HOMEOBOX PROTEIN CUT 24 666 - -
Bma12g00932 668 Coils Coil 428 462 - -
Bma12g00932 668 Coils Coil 316 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00932 K09313 CUTL; homeobox protein cut-like - csv:101221135 1073.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g346 . . Bda06g00485 . . . . Bma12g00932 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0272 . . . . . . . . . . Bpe07g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011821 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00932 Bma_Chr12 FPKM 61.640602 67.17318 65.785629 64.861839 14.218972 13.5006 16.846134 108.167213 112.023933 125.831451