Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00933 ATGTATGGAGGAGATGAAGTTTCGGCCATTGTCATTGACCTTGGTTCACACACTTGTAAAGCTGGTTATGCTGGGGAAGACGCGCCCAAGGCTGTGTTTCCCTCCGTTGTCGGCTCAATTGACCAAATGGAAGTTGACGACCCAGTGAACACTGACAAAAACTCTGTATCGGCAGTTGATTCTAAAATTAGTAAAAATATCGATACAGAAAAACTGAAGGGTAAACGTAAATTATATGTTGGGTCTCAAGCATTAGGATTCCGACGCGATCACATGGAGGTGCTATCTCCTATAAAAGATGGTGTTGTTGTCGACTGGGATATGATTGATAGCATTTGGGATCATGCCTTCAGGGAATGCCTTCTGGTTGATCCTAAAGAGCACCCAATGCTACTTGCGGAACCATCTTTTAACTCACAACAGCAGAGAGAAAGGACAGCAGAACTTATGTTTGAAAAATACAATGTTCCTGCATTATTTCTTGCTAAAAATGCAGTTCTCACATCTTTTGCTTCTGGGCGTGCTACCTCCTTAGTTGTTGATAGTGGTGGAGGATCGACTACAGTTGCTCCAGTGCATGATGGTTATGTTCTTCAAAAGGCTGTGTCGTCTTCTCCTATTGGAGGTGAAGTTCTGACTGATTGCTTGGTAAAAAGTTTGGAGAGCAAAGGTATCGTGATAAAGCCCAGGTACTCATTCAAAAGAAAGGAAATACGTCCAGGAGACTTTCAGGCAGTGGATCTTGATTTTCCAAATACCACAGAAAGTTATAGACTTTACTCCCAGAGGGTAATTGCCAGTGATATCAAGGAATGTGTCTGTCGGGCCCCAGATTCTCCATACGATGAGAGTGCATATTCAAACATTCCAATGACCCCTTACGAACTTCCTGATGGCCAGACTATTGAAATTGGTGCGGATAGATTCAAGGTCCCTGATGTTCTTTTTAATCCATCCCTTTTACAGACAATTCCTGGTATGGAGACTTTTGCTGAGACTGCATCTATGGTTCGTGGGCTGCCACAAATGGTTATAGAAAGCATAAACAAGTGTGATGTGGACATTCGAAGAGAACTTTTCAGTAGTATACTGCTTGCTGGTGGCACAGCATCAATGCAGCAGTTGAAGGAGCGTCTTGAGAAAGACTTGTTAGAGGAATCTCCCCAAGCTGCTCGTGTTAAAGTTTTAGCAAGTGGAAATGCAACGGAAAGAAGATTTAGTGTCTGGATTGGAGGTAGCATATTGGCTTCCCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAGTCTGAGTATGAAGAACACGGGGCGTCCTATGTTCAAAGAAAGTGCCCTTAG 1335 43.22 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPVNTDKNSVSAVDSKISKNIDTEKLKGKRKLYVGSQALGFRRDHMEVLSPIKDGVVVDWDMIDSIWDHAFRECLLVDPKEHPMLLAEPSFNSQQQRERTAELMFEKYNVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVSSSPIGGEVLTDCLVKSLESKGIVIKPRYSFKRKEIRPGDFQAVDLDFPNTTESYRLYSQRVIASDIKECVCRAPDSPYDESAYSNIPMTPYELPDGQTIEIGADRFKVPDVLFNPSLLQTIPGMETFAETASMVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYVQRKCP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41011392 41092439 + Bma030518 Bma12g00933 92359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00933 444 SUPERFAMILY Actin-like ATPase domain 173 443 IPR043129 -
Bma12g00933 444 Pfam Actin 4 443 IPR004000 -
Bma12g00933 444 PANTHER - 2 443 - -
Bma12g00933 444 SUPERFAMILY Actin-like ATPase domain 5 180 IPR043129 -
Bma12g00933 444 Gene3D - 183 383 - -
Bma12g00933 444 PANTHER ACTIN 2 443 IPR004000 -
Bma12g00933 444 SMART actin_3 7 444 IPR004000 -
Bma12g00933 444 Gene3D - 389 444 - -
Bma12g00933 444 Gene3D - 1 182 - -
Bma12g00933 444 Gene3D Actin; Chain A, domain 4 209 322 - -
Bma12g00933 444 CDD NBD_sugar-kinase_HSP70_actin 96 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00933 K11340 ACTL6A, INO80K; actin-like protein 6A - zju:107417842 806.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00795 Bma-Chr2:42736415 Bma12g00933 Bma-Chr12:41011392 1.12E-12 dispersed
Bma12g00933 Bma-Chr12:41011392 Bma13g00594 Bma-Chr13:13651268 2.52E-56 dispersed
Bma12g00933 Bma-Chr12:41011392 Bma11g00120 Bma-Chr11:1143658 3.45E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g349 . . . . . . . Bma12g00933 . . Cma10g00243 . Car10g00229 . . . . . . . . . . . Cla06g01479 Cam06g1633 Cec06g1696 Cco06g1690 Clacu06g1599 Cmu06g1548 Cre06g2360 . . . . . . . . . Blo15g00369 . . . . . . . . . . . . . . Cpe18g00750 . . . . . . . . . . . . . . Lsi06g01342 . Chy02g02375 Cme02g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00933 Bma_Chr12 FPKM 2.865135 2.396573 2.218624 3.504474 2.939139 3.256034 4.266447 3.333048 3.983789 5.59705