Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00937 ATGGCTTGGAGGAGGGTGTTGAAGGCCGTACAAGCACTGGTGGCACACTGTTCTCTCTTTTGCTTCACACTTCTGCTCGTTTTCAAGCTCGATCACCTTGTTTCCTACAGTTGGTGGGTAATTTTTTTCCCGCTGTGGGCCTTTCATGCAGTCGTTGCTCGAGGAAGGTTCTCATTACCCGCCCCCATCAGTTTCCACACAATCACAATGTGGTGGGCACCTTGCCATGCTGTTGTTGCCACGCCCTTGCTTATTGCATTTGAATTGCTTCTTTGTATATATCTTGAGAGTATATATGTACATGGTTTTCCAGCACTCAGTCTGAAGATTGTCTTTCTTCCAGTATTGGCGTTTGAAATGACTATTTTAATTGATAATTTCAGGGCTCTTATGCCGGGTGATAATGAAGGCTTGAATGATGAGGCTATATGGGAGACTCTTCCTGGAACTCCAGCTAATGCTAAATATATACCACTCCCAGCTCTTTTTTCGCCTCTTTTTCTGCTGCAAGGTGCTGGTGTATTACTTTCAGCATCGATATTGGTGGAGAGGATTGTTCTTCTCCGGGGAAGTGGATTTGGCACTGGGTTGTATTTCAGATTTTCTTCAAAAGCCAATGAATGTTTTGAGTTCTTTCATCGTGGATCAAGGCTTTTGGGTTGGTGGTCAATTGAAGAAGGAAATCGTGAGGAAATGGCCCGATTATTTCACGAAGCAACATCTGGGTATAATACGTTCTCTGGTTATCCTCCTGAGATTGTCAAAAAAATGACCAAGAAAGATCTTGCTGAGGAGGAGAAAGTGTTATGTCGAGTTTGCTTCGAGAGAGAGATCAGCGTTGTCCTTCTTCCGTGTAGGCATCGAATACTTTGCAGTATGTGCTCGGCCAAGTGTAAAAAATGTCCGATTTGCCGAGTCTCTATCGAGGAGCTTTTACCTGTATATGACGTT 951 43.95 MAWRRVLKAVQALVAHCSLFCFTLLLVFKLDHLVSYSWWVIFFPLWAFHAVVARGRFSLPAPISFHTITMWWAPCHAVVATPLLIAFELLLCIYLESIYVHGFPALSLKIVFLPVLAFEMTILIDNFRALMPGDNEGLNDEAIWETLPGTPANAKYIPLPALFSPLFLLQGAGVLLSASILVERIVLLRGSGFGTGLYFRFSSKANECFEFFHRGSRLLGWWSIEEGNREEMARLFHEATSGYNTFSGYPPEIVKKMTKKDLAEEEKVLCRVCFEREISVVLLPCRHRILCSMCSAKCKKCPICRVSIEELLPVYDV 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41121314 41128280 - Bma030519 Bma12g00937 92363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00937 317 SUPERFAMILY RING/U-box 257 312 - -
Bma12g00937 317 Pfam Transmembrane Fragile-X-F protein 29 148 IPR019396 -
Bma12g00937 317 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 149 317 - -
Bma12g00937 317 SMART ring_2 270 304 IPR001841 -
Bma12g00937 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 317 IPR013083 -
Bma12g00937 317 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 148 - -
Bma12g00937 317 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 149 317 - -
Bma12g00937 317 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 148 - -
Bma12g00937 317 Pfam Zinc finger, C3HC4 type (RING finger) 267 310 - -
Bma12g00937 317 ProSiteProfiles Zinc finger RING-type profile. 270 305 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00937 Bma-Chr12:41121314 Bma06g00614 Bma-Chr6:32710582 1.72E-08 dispersed
Bma12g00937 Bma-Chr12:41121314 Bma12g00940 Bma-Chr12:41204920 0 proximal
Bma01g00153 Bma-Chr1:1423221 Bma12g00937 Bma-Chr12:41121314 4.11E-38 wgd
Bma12g00937 Bma-Chr12:41121314 Bma08g00784 Bma-Chr8:45211148 1.25E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00937 - - nta:107761150 316.62