Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00937 | ATGGCTTGGAGGAGGGTGTTGAAGGCCGTACAAGCACTGGTGGCACACTGTTCTCTCTTTTGCTTCACACTTCTGCTCGTTTTCAAGCTCGATCACCTTGTTTCCTACAGTTGGTGGGTAATTTTTTTCCCGCTGTGGGCCTTTCATGCAGTCGTTGCTCGAGGAAGGTTCTCATTACCCGCCCCCATCAGTTTCCACACAATCACAATGTGGTGGGCACCTTGCCATGCTGTTGTTGCCACGCCCTTGCTTATTGCATTTGAATTGCTTCTTTGTATATATCTTGAGAGTATATATGTACATGGTTTTCCAGCACTCAGTCTGAAGATTGTCTTTCTTCCAGTATTGGCGTTTGAAATGACTATTTTAATTGATAATTTCAGGGCTCTTATGCCGGGTGATAATGAAGGCTTGAATGATGAGGCTATATGGGAGACTCTTCCTGGAACTCCAGCTAATGCTAAATATATACCACTCCCAGCTCTTTTTTCGCCTCTTTTTCTGCTGCAAGGTGCTGGTGTATTACTTTCAGCATCGATATTGGTGGAGAGGATTGTTCTTCTCCGGGGAAGTGGATTTGGCACTGGGTTGTATTTCAGATTTTCTTCAAAAGCCAATGAATGTTTTGAGTTCTTTCATCGTGGATCAAGGCTTTTGGGTTGGTGGTCAATTGAAGAAGGAAATCGTGAGGAAATGGCCCGATTATTTCACGAAGCAACATCTGGGTATAATACGTTCTCTGGTTATCCTCCTGAGATTGTCAAAAAAATGACCAAGAAAGATCTTGCTGAGGAGGAGAAAGTGTTATGTCGAGTTTGCTTCGAGAGAGAGATCAGCGTTGTCCTTCTTCCGTGTAGGCATCGAATACTTTGCAGTATGTGCTCGGCCAAGTGTAAAAAATGTCCGATTTGCCGAGTCTCTATCGAGGAGCTTTTACCTGTATATGACGTT | 951 | 43.95 | MAWRRVLKAVQALVAHCSLFCFTLLLVFKLDHLVSYSWWVIFFPLWAFHAVVARGRFSLPAPISFHTITMWWAPCHAVVATPLLIAFELLLCIYLESIYVHGFPALSLKIVFLPVLAFEMTILIDNFRALMPGDNEGLNDEAIWETLPGTPANAKYIPLPALFSPLFLLQGAGVLLSASILVERIVLLRGSGFGTGLYFRFSSKANECFEFFHRGSRLLGWWSIEEGNREEMARLFHEATSGYNTFSGYPPEIVKKMTKKDLAEEEKVLCRVCFEREISVVLLPCRHRILCSMCSAKCKKCPICRVSIEELLPVYDV | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41121314 | 41128280 | - | Bma030519 | Bma12g00937 | 92363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00937 | 317 | SUPERFAMILY | RING/U-box | 257 | 312 | - | - | |
Bma12g00937 | 317 | Pfam | Transmembrane Fragile-X-F protein | 29 | 148 | IPR019396 | - | |
Bma12g00937 | 317 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 149 | 317 | - | - | |
Bma12g00937 | 317 | SMART | ring_2 | 270 | 304 | IPR001841 | - | |
Bma12g00937 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 317 | IPR013083 | - | |
Bma12g00937 | 317 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 1 | 148 | - | - | |
Bma12g00937 | 317 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 149 | 317 | - | - | |
Bma12g00937 | 317 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 148 | - | - | |
Bma12g00937 | 317 | Pfam | Zinc finger, C3HC4 type (RING finger) | 267 | 310 | - | - | |
Bma12g00937 | 317 | ProSiteProfiles | Zinc finger RING-type profile. | 270 | 305 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma12g00937 | Bma-Chr12:41121314 | Bma06g00614 | Bma-Chr6:32710582 | 1.72E-08 | dispersed | |
Bma12g00937 | Bma-Chr12:41121314 | Bma12g00940 | Bma-Chr12:41204920 | 0 | proximal | |
Bma01g00153 | Bma-Chr1:1423221 | Bma12g00937 | Bma-Chr12:41121314 | 4.11E-38 | wgd | |
Bma12g00937 | Bma-Chr12:41121314 | Bma08g00784 | Bma-Chr8:45211148 | 1.25E-10 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00937 | - | - | nta:107761150 | 316.62 |