Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00940 ATGGCTTGGAGGAGGGTGTTGAAGGCCGTACAAGCACTGGTGGCCCACTGTTCTCTCTTTTGCTTCACACTTCTGCTCGTTTTCAAGCTCGATCACCTTGTTTCCTACAGTTGGTGGGTAATTTTTTTCCCGCTGTGGGCCTTTCATGCAGTCGTTGCTCGAGGAAGGTTCTCATTACCCGCCCCATCAGTTCCACACAATCACAATTGGGCACCTTGCCATGCTGTTGTTGCCACGCCCTTGCTTATTGCATTTGAATTGCTTCTTTGTATATATCTTGAGAGTATATATGTACATGGTTTTCCAGCACTCAGTCTGAAGATTGTCTTTCTTCCAGTATTGGCGTTTGAAATGACTATTTTAATTGATAATTTCAGGGCTCTTATGCCGGGTGATAATGAAGGCTTGAATGATGAGGCTATATGGGAGACTCTTCCTGGAACTCCAGCTAATGCTAAATATATACCACTCCCAGCTCTTTTTTCGCCTCTTTTTCTGCTGCAAGGTGCTGGTGTATTACTTTCAGCATCAATATTGGTGGAGAGGATTGTTCTTCTCCGAGGAAGTGGATTTGGCACTGGGTTGTATTTCAGATTTTCTTCAAAAGCCAATGAATGTTTTGAGTTCTTTCATCGTGGATCAAGGCTTTTGGGTTGGTGGTCAATTGAAGAAGGAAATCGTGAGGAAATGGCCCGATTATTTCACGAAGCAACATCTGGGTATAATACGTTCTCTGGTTATCCTCCTGAGATTGTCAAAAAAATGACCAAGAAAGATCTTGCTGAGGAGGAGAAAGTGTTATGTCGAGTTTGCTTCGAGAGAGAGATCAGCGTTGTCCTTCTTCCGTGTAGGCATCGAATACTTTGCAGTATGTGCTCGGCCAAGTGTAAAAAATGTCCGATTTGCCGAGTCTCTATCGAGGAGCTTTTACCTGTATATGACGTT 945 43.7 MAWRRVLKAVQALVAHCSLFCFTLLLVFKLDHLVSYSWWVIFFPLWAFHAVVARGRFSLPAPSVPHNHNWAPCHAVVATPLLIAFELLLCIYLESIYVHGFPALSLKIVFLPVLAFEMTILIDNFRALMPGDNEGLNDEAIWETLPGTPANAKYIPLPALFSPLFLLQGAGVLLSASILVERIVLLRGSGFGTGLYFRFSSKANECFEFFHRGSRLLGWWSIEEGNREEMARLFHEATSGYNTFSGYPPEIVKKMTKKDLAEEEKVLCRVCFEREISVVLLPCRHRILCSMCSAKCKKCPICRVSIEELLPVYDV 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41204920 41210059 - Bma030522 Bma12g00940 92366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00940 315 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 145 315 - -
Bma12g00940 315 Pfam Transmembrane Fragile-X-F protein 29 146 IPR019396 -
Bma12g00940 315 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 146 - -
Bma12g00940 315 SUPERFAMILY RING/U-box 255 310 - -
Bma12g00940 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 314 IPR013083 -
Bma12g00940 315 Pfam Zinc finger, C3HC4 type (RING finger) 265 308 - -
Bma12g00940 315 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 146 - -
Bma12g00940 315 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 145 315 - -
Bma12g00940 315 ProSiteProfiles Zinc finger RING-type profile. 268 303 IPR001841 -
Bma12g00940 315 SMART ring_2 268 302 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00153 Bma-Chr1:1423221 Bma12g00940 Bma-Chr12:41204920 4.48E-38 dispersed
Bma09g00653 Bma-Chr9:44070345 Bma12g00940 Bma-Chr12:41204920 3.21E-66 dispersed
Bma12g00940 Bma-Chr12:41204920 Bma08g00784 Bma-Chr8:45211148 1.22E-10 dispersed
Bma12g00937 Bma-Chr12:41121314 Bma12g00940 Bma-Chr12:41204920 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00940 - - nta:107761150 334.724