Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00941 CAGGACTACTACACTGCTCATGGAGATAACGCAACATTCATTGCAAAGACATACTACCATACCACTACTGCTTTACGACAACTTGGTAGTGGATCTGATGGGCTATCTAGTGTGAGCATCAGTAAAAATATGTTTGAGTCAATTGCTCGTGATATCCTTCTGGAGAGAACAGATCATACCATCGAGCTTTATGAGGGAAGTGGCTCAAGTTGGAGACTGATCAAGAGTGGCACTCCTGGGAATCTTGGTAGCTTTGAGGACATTTTGTTTGCAAACAATGAGATGCAGGAAACCCCTGTTGTTGTTTCTTTATTTCCAAGCTTCCGAGAAAATGGATGTACTATTGGATTAGGATATATTGATCTAACTAAAAGACTACTGGGTTTGGCTGAATTTCCTGATGATAGCCACTTTACTAATGTGGAGTCAGCCTTGGTTGGTCTAGGTTGCAAGGAATGTCTCTTGCCTCTAGAAAGTGGCAAGTCCAGCGAAATTAAGGCTTTACATGAAGCATTAACAAGATGTAGTGTCATGTTAACAGAGAGGAAAAAAACAGAGTTCAAAATGAGAGATTTAATGCAGGACCTTGCTAGGCTTGTCAAAGGTTCTGTCGAACCAGTTAAGGATTTGGTGTGTGGGTTTGAGTTTGCACCTGGAGCTTTAGGGGCATTGATATCATATGCAGATTTACTTGCAGATGAGTGCAATTATGGAAATTATAGTATCATGAGGTACAATCTTGATAGTGTGATGAGGTTAGACACTGCTGCCATGAGGGCACTAAACATCCTGGAAAGCAAAACTGATGCAAACAAGAATTTCAGTTTGTTTGGTCTCATTAATCGAACATGTACTGCTGGAATGGGAAAACGACTACTGCACAAGTGGCTAAAACAGCCTTTGCTGGATGTGAAAGAAATTAATTGCAGGCTTGATTTGGTTCAGGCTTTTGTGGAGGATGCTGCTCTGCAACAAAATCTGAGACAACATCTCAAAAGAATTTCGGATTTGGAGCGATTATCACAGAGTCTTCAAAAAAAAAGAGCTGGTTTGCAGCATGTTGTTAAACTTTATCAGTCAAGTATCAGACTTCCATACATAAAAAGTGCTTTGGATCAATATGATGGACAATTTTCCTCTCTGATCAAAGAAAGGTATTTAGATTCTCTTGATTTCTGGACAGACGATGAGCACCTGAACAAGTTTATCTGCCTTGTTGAAACTTCAGTAGACCTTGAACAACTTGAGAATGGTGAATATATGATCGCATCAAGTTATGATTCTGCATTGTCTGAGTTAAAGAATGAGCAAGAGTCATTGGAGCATCAAATACACAATTTGCATAAACAAACTGCCAATGATCTTGATCTGGTTATAGATAAAGCATTAAAGTTAGATAAAGGCACACAATTTGGACATGTTTTCAGAATAACAAAGAAGGAAGAACCAAAAATAAGGAAAAAGCTCTCTTCCCAATTTATTGTGCTTGAAACTAGAAAAGATGGAGTGAAATTTACAAATACAAAGCTTAAAAAGTTGGGAGACCAGTATCAAAAGAAACTAGAGGAGTATAAGCGATTCCAGAGAGAGCTTGTTACCCGGGTTGTACAAACTGCAGCAACCTTCTCTGAGGTATTTGGATCGGTAGCTGAGATGCTTTCAGAGTTGGATGTTTTGCTTAGTTTTGCTGATTTGGCCTCTTGTTCTCCTAATCCTTACACCAGACCACACATCACTGCCTCGGACCAGGGAGATATTGTATTAGAAGGGTGTAGACACCCATGCGTGGAGGCTCAGGACTGGGTTAACTTTATACCAAATGATTGTAAGCTTGTGAGGGGTGAAAGTTGGTTTCAGATTATTACTGGGCCCAACATGGGAGGAAAATCAACATTTATTAGACAGGTTGGAGTAAATATTCTGATGGCACAAGTAGGTTGTTTTGTTCCTTGTGATAAAGCCAGTATATCAGTACGTGATTGCATTTTTGCTCGCGTAGGTGCTGGAGACTGCCAACTGCGTGGCGTTTCTACATTTATGCAAGAGATGCTTGAAACTGCATCTATATTGAAAGGAGCAACTGATAAGTCACTGATAATAATTGATGAGTTGGGCCGTGGGACATCGACGTATGATGGATTCGGCTTAGCATGGGCCATTTGTGAGCATATTGTCGAAGAGATCAAAGCTCCTACTTTGTTTGCAACTCACTTTCATGAACTGACAACATTAGCTCATCAAAATGGTAATGTGCCTAATCCACAACATATTATTGGCGTGGCAAACTATCATGTTAGTGCGCACATAGACTCCTCAACTCGCAAACTAACCATGTTGTACAAGGTTGAGCCAGGGCCTTGCGATCAAAGTTTCGGCATCCACGTTGCAGAGTTTGCCAATTTTCCAGCTAGTGTGGTGGCCCTTGCCAGAGAGAAGGCTGCTGAATTGGAAGATTTTTCACCTGAGGCATCCATTTTGAATGATGATGAAGAAAAGGTGGGTTCGAAACGAAAAAGAGAAATAGGGTCAGACGATGTATCGAAAGGGGTGGCCCGGGCTCGCAAATTTCTGAAATGTTTTGCCGATTTGCCATTGGATAAGATGTGTATGAAGGAGGCTTTGGAGAATGTTGTCAAATTGAAAGACGAGTTAAAGAAAGATGCAGCTCACTCTCATTGGCTTCAGCAATTACTT 2694 40.76 QDYYTAHGDNATFIAKTYYHTTTALRQLGSGSDGLSSVSISKNMFESIARDILLERTDHTIELYEGSGSSWRLIKSGTPGNLGSFEDILFANNEMQETPVVVSLFPSFRENGCTIGLGYIDLTKRLLGLAEFPDDSHFTNVESALVGLGCKECLLPLESGKSSEIKALHEALTRCSVMLTERKKTEFKMRDLMQDLARLVKGSVEPVKDLVCGFEFAPGALGALISYADLLADECNYGNYSIMRYNLDSVMRLDTAAMRALNILESKTDANKNFSLFGLINRTCTAGMGKRLLHKWLKQPLLDVKEINCRLDLVQAFVEDAALQQNLRQHLKRISDLERLSQSLQKKRAGLQHVVKLYQSSIRLPYIKSALDQYDGQFSSLIKERYLDSLDFWTDDEHLNKFICLVETSVDLEQLENGEYMIASSYDSALSELKNEQESLEHQIHNLHKQTANDLDLVIDKALKLDKGTQFGHVFRITKKEEPKIRKKLSSQFIVLETRKDGVKFTNTKLKKLGDQYQKKLEEYKRFQRELVTRVVQTAATFSEVFGSVAEMLSELDVLLSFADLASCSPNPYTRPHITASDQGDIVLEGCRHPCVEAQDWVNFIPNDCKLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELTTLAHQNGNVPNPQHIIGVANYHVSAHIDSSTRKLTMLYKVEPGPCDQSFGIHVAEFANFPASVVALAREKAAELEDFSPEASILNDDEEKVGSKRKREIGSDDVSKGVARARKFLKCFADLPLDKMCMKEALENVVKLKDELKKDAAHSHWLQQLL 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41211977 41217933 - Bma030523 Bma12g00941 92367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00941 898 PIRSF MSH2 1 898 IPR011184 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 Pfam MutS domain V 619 817 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 Gene3D DNA repair protein MutS, domain I 1 78 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 SUPERFAMILY DNA repair protein MutS, domain III 254 567 IPR036187 -
Bma12g00941 898 Pfam MutS domain I 2 85 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 Coils Coil 870 890 - -
Bma12g00941 898 Gene3D MutS, connector domain 79 248 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 ProSitePatterns DNA mismatch repair proteins mutS family signature. 697 713 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 SMART DNAend 271 599 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 SMART mutATP5 616 814 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 818 IPR027417 -
Bma12g00941 898 Coils Coil 320 347 - -
Bma12g00941 898 Gene3D - 574 897 IPR027417 -
Bma12g00941 898 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 2 882 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Bma12g00941 898 Pfam MutS family domain IV 426 519 IPR007861 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 2 882 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bma12g00941 898 CDD ABC_MSH2_euk 587 817 - -
Bma12g00941 898 Coils Coil 510 530 - -
Bma12g00941 898 Pfam MutS domain III 257 563 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 Coils Coil 423 450 - -
Bma12g00941 898 Pfam MutS domain II 109 240 IPR007860 GO:0005524|GO:0006298|GO:0030983
Bma12g00941 898 Gene3D - 480 573 - -
Bma12g00941 898 Gene3D - 251 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00941 K08735 MSH2; DNA mismatch repair protein MSH2 - qsu:112024698 1506.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01774 Bma-Chr1:60470833 Bma12g00941 Bma-Chr12:41211977 2.00E-10 dispersed
Bma07g01592 Bma-Chr7:51189497 Bma12g00941 Bma-Chr12:41211977 2.39E-41 dispersed
Bma12g00941 Bma-Chr12:41211977 Bma14g02081 Bma-Chr14:44157620 1.24E-56 dispersed
Bma12g00938 Bma-Chr12:41130201 Bma12g00941 Bma-Chr12:41211977 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g364 . . Bda06g00491 . . . . Bma12g00941 . . Cma10g00249 . Car10g00237 . . . . . . . . . . . Cla06g01486 Cam06g1640 Cec06g1700 Cco06g1698 Clacu06g1606 Cmu06g1555 Cre06g2367 . . . Cone19ag0263 . . . . . Blo15g00365 . . Bpe07g00731 . . . . Cmo10g00269 . . . . . . Cpe18g00743 . . . . . . . . . . . . . . Lsi06g01348 Csa01g00363 Chy02g02380 Cme02g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007788 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00941 Bma_Chr12 FPKM 16.124393 19.67008 33.401581 32.908897 43.103519 45.455288 46.726372 37.65715 34.705479 36.334209