Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00945 ATGCCAGTGTCGACGAGGTCTCAGATCTTCAATGACGGGCAAAGTGATCCAATTTCAGAACAGAGAATTGGGTCTAGATTAGATCAAGAAGATAAGCACAGTGTGGATCTTGCGTTAAGAAACCCACACCACAGATTAAAGGAGAAGATGAGGGCTTTAACCCTTTCGTATGAACAGCAGAAGCAAGCTTCCGCAGCTCTCAAGAATGAATCTTTGAGATCGGAAGAGTTTCGATTTTGTACGCACCCGAGCGTGGAGCTTTCTGCTTCTTGTAAGAAAGAAGAGAAAAGGGCAAATGTTGATCGTATCATGAGAGAAAATGTAATCCCTAGTGCTGCCATTAATAGAGCTTCTGTACTACGTCAGCCGCCAACTGCATATTGTAGAGAGAATATGGAGGTTGTAAAAGATCGAATTCAAGGGCTTCCGTATCCAAGAAAAGGCACTACTTCCACAACAGTTAAGAGAAAGCTCTCAATGGGAGTTTCGGCAGTTGTTGGGGTGAAGAATGATCAAGAAATTGACGAATTGAGAAGCGATTTGGAGAAGAAGGACATGGAGGCGAGCCGAATTCTCGTATTCGTGAGACTCAGGCCAATGGCAGCTAAAGAGAAGGAAGTGGGTTCGCATTGTTGTGTAAAGATGTTGAACAGGAGAGAAGTTTACCTTACAGAATTCTGTCATGAAAACGATTATTTGAGACTCAAAAGACTAAGAGGACGCCATTTTACCTTCGATGCTTGCTTTCCAGAAACCACTTCCCAGCAGGAAGTTTACTCCACAACAACTGCTGAGCTCGTGGAATCAGTTCTACAGGGAAGGAATGGCACAGTAATTTGCTATGGTGCCACAGGAGCTGGAAAAACTTACACAATGCTTGGAACAGTGGAGAATCCAGGAGTGATGGTTTTAGCAATTAAGGACCTATTCACCAAGATTAGGCAAAGGAGCTGCGATGGAAATCATGTCGTTCATCTCTCCTACATAGAGGTCTACAACGAAACAGTTAGAGACTTAGTCGCTCCTGGAAGACCACTTGTTCTTAGAGAAGATAAACAAGGAATTGTTGCTGCAGGTCTTACACAGTACAGAGCTTATTCCACAGATGAAGTGATGGCTTTACTTCAGCAAGGAAATCTTAACAGAACCACTGAACCGACCCGCATGAACGAAACCTCGTCGCGTTCCCACGCTATTTTACAGGTGATGGTTGAATATCGAGTGAAAGACATGGACATGAATGTCATTAACAAAGTAGGTAAACTCTCGCTAATCGATCTTGCTGGGTCGGAGAGAGCTCTTGCGACCGATCAGCGAACCCTTCGGTCTCTCGAGGGTGCTAATATAAATAGATCATTGCTTGCACTAAGCAGCTGTATAAATGCACTAGTTGAAGGCAAGAAACACATACCCTTTAGAAACTCAAAACTTACTCAACTTCTCAAAGACTCACTGGGAGGAGCTTGTAACACTGTCATGATTGCTAATATCAGCCCGAGCTATCTGTCGTTTGGCGAGACTCAAAACACGCTTCATTGGGCAGATCGAGCCAAGGAGATCAGAACCAAGGCTGCAGAGGGAAATGAAGAAGTAGTGAAATTATCCGGATCAGAATCCGAGCAGGCCAAGCTATTGCTCGAATTGCAGAAAGAGAATCGTGAATTGAGGGTGCAATTGGCCCGCCAGCAGCAGAAGTTACTCACATTCCAGGCACAGTTACTGGCAGCAAATGCTTCTCCAACACCTTCTTCGGTCACGTCTATGTTAACTCCTCCATCTTTGGCTCGACCACCCGAAAAGCAAAAACCAAGATCTTCTTTCTTAGCTCAGAATTGTTTTACTCCGAATTCGAAGAAAAGAGATGAAGTGGGAAGAGGGCTTCATAGAACTGGGAAACCATTAGAAGCAGAACTCGAGAGGATGAAGAAAGATCACGCCTTGCAGTTGAAGCAGAAAGACAATATTATCAAAGTTCTTTTGAAGAAATGCGAAAAGCAATTGGGAGATGGAGGGGCCGGGAAGGAAGGCATAAAGAAAGTAGTCATAAGGGGTAGTTTGAGGCCAAAGGAGACCTCCACTGGTGAGTTGAGAGGCCTGAGTCATCGGTTTAAGTCCCCGGCTCCTGTAGCCAAAAAACGAAGCTTTTGGGACATAACTGCAGCAAATAGTCCATCTGTGGCTACTCTAAATGGAAGGAAAACTAGAAGTTTTGTTGCTAATCAGTCTAATGCAGCTCCTTCTCTGCTTCTTCAGGTACTCTGA 2262 44.43 MPVSTRSQIFNDGQSDPISEQRIGSRLDQEDKHSVDLALRNPHHRLKEKMRALTLSYEQQKQASAALKNESLRSEEFRFCTHPSVELSASCKKEEKRANVDRIMRENVIPSAAINRASVLRQPPTAYCRENMEVVKDRIQGLPYPRKGTTSTTVKRKLSMGVSAVVGVKNDQEIDELRSDLEKKDMEASRILVFVRLRPMAAKEKEVGSHCCVKMLNRREVYLTEFCHENDYLRLKRLRGRHFTFDACFPETTSQQEVYSTTTAELVESVLQGRNGTVICYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYIEVYNETVRDLVAPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQQGNLNRTTEPTRMNETSSRSHAILQVMVEYRVKDMDMNVINKVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPFRNSKLTQLLKDSLGGACNTVMIANISPSYLSFGETQNTLHWADRAKEIRTKAAEGNEEVVKLSGSESEQAKLLLELQKENRELRVQLARQQQKLLTFQAQLLAANASPTPSSVTSMLTPPSLARPPEKQKPRSSFLAQNCFTPNSKKRDEVGRGLHRTGKPLEAELERMKKDHALQLKQKDNIIKVLLKKCEKQLGDGGAGKEGIKKVVIRGSLRPKETSTGELRGLSHRFKSPAPVAKKRSFWDITAANSPSVATLNGRKTRSFVANQSNAAPSLLLQVL 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41352191 41355441 + Bma008287.1 Bma12g00945 92371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00945 753 Coils Coil 545 572 - -
Bma12g00945 753 SMART kinesin_4 188 528 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00945 753 Pfam Kinesin motor domain 196 520 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00945 753 PANTHER KINESIN-LIKE PROTEIN 158 751 - -
Bma12g00945 753 MobiDBLite consensus disorder prediction 580 606 - -
Bma12g00945 753 ProSiteProfiles Kinesin motor domain profile. 190 520 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00945 753 PRINTS Kinesin heavy chain signature 470 491 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00945 753 PRINTS Kinesin heavy chain signature 273 294 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00945 753 PRINTS Kinesin heavy chain signature 387 404 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00945 753 PRINTS Kinesin heavy chain signature 421 439 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00945 753 PANTHER CENTROMERE PROTEIN E 158 751 - -
Bma12g00945 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 565 IPR027417 -
Bma12g00945 753 ProSitePatterns Kinesin motor domain signature. 420 431 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bma12g00945 753 Coils Coil 43 70 - -
Bma12g00945 753 Gene3D Kinesin motor domain 181 526 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00945 K10401 KIF18_19; kinesin family member 18/19 - qsu:111997080 1048.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00253 Bma12g00945 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00981 Bma-Chr11:44209021 Bma12g00945 Bma-Chr12:41352191 4.13E-36 dispersed
Bma12g00945 Bma-Chr12:41352191 Bma15g01090 Bma-Chr15:43435777 8.24E-79 dispersed
Bma12g00945 Bma-Chr12:41352191 Bma14g00478 Bma-Chr14:5404537 2.26E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00945 Bma_Chr12 FPKM 3.731183 4.343781 3.337222 6.00472 6.359008 6.053799 6.365958 4.589126 4.884144 4.998357