Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00948 GGAAATGTCTCACGATTCCCTCGTGTCAGTATTTGGGATCCTTACAAACGTCTAGGTGTAAGTCGTGATGCCTCAGAGGAAGAAATTTGGAGTGCCCGCAATTTTCTGTTGCAGCAGTATGTTGGACATGAGAGAAGTGAAGAATCAATCGAAGGCGCTTTTGAGAAGATACTCATGGCCAGCTTCCAACATCGAAAAAAGACGAAAATCAATTTGAAAACTCAGTTGAAAAAGCAAGTAGAGGAGTCTCCACCTTGGATTAAGAACTTGCTCAATTTTGTTGAACTTCCTCCAACGGATGTTATTTTCAGAAGATTATTTCTCTTTGCATTCATGGGGGGATGGAGTATTATGAATTCTGCAGAAGGTGGACCTGCTTTTCAGGTTGCAGTCTCGTTGGCAGCTTGCATATATTTTTTGAACGAAAAGACGAAAAGCGTGGCCAGGGCGTCAATCATTGGATTTGGAGCTCTTGTGATTGGTTGGGTAAGCGGTTCGATTCTAGGACCCAATATTCCGTCATTTTTGTTGAACCCGACTTGGTCGCTCGAACTCCTCACTTCTCTAGTAGTATATGTCTTCTTGTTTTTGGCATGTGCTTTCCTCAAGTAG 612 42.81 GNVSRFPRVSIWDPYKRLGVSRDASEEEIWSARNFLLQQYVGHERSEESIEGAFEKILMASFQHRKKTKINLKTQLKKQVEESPPWIKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSVARASIIGFGALVIGWVSGSILGPNIPSFLLNPTWSLELLTSLVVYVFLFLACAFLK 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41402507 41403516 + Bma008291.1 Bma12g00948 92374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00948 203 PANTHER - 3 203 IPR021788 -
Bma12g00948 203 Pfam Protein CHAPERONE-LIKE PROTEIN OF POR1-like 22 202 IPR021788 -
Bma12g00948 203 PANTHER PROTEIN CHAPERONE-LIKE PROTEIN OF POR1, CHLOROPLASTIC 3 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00948 - - - csv:101209271 375.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00970 Bma-Chr3:10291990 Bma12g00948 Bma-Chr12:41402507 7.76E-41 dispersed
Bma12g00916 Bma-Chr12:40604457 Bma12g00948 Bma-Chr12:41402507 8.13E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g391 . . Bda06g00498 . . . . Bma12g00948 . . Cma10g00264 . Car10g00247 . Sed08g0321 . . Bhi02g00029 Tan09g1973 Cmetu02g2048 . Hepe09g0310 . . Cla06g01503 Cam06g1657 Cec06g1719 Cco06g1714 Clacu06g1624 Cmu06g1573 Cre06g2383 . . Cone13ag0012 Cone19ag0010 . . . . . . . . . . . . . Cmo10g00281 . . . . . . Cpe18g00733 . . . . . . . . . . . . . . Lsi06g01367 Csa01g00307 Chy02g02431 Cme02g01784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008464 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 0 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00948 Bma_Chr12 FPKM 1.759015 2.399274 6.253485 6.069689 7.309653 6.537989 7.778409 7.543296 7.747729 6.603699