Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00953 ATGGAAATCGTCGATCTCTTGGACCGTGGGAACCAGGCCAGCTATGTGATGGATCTGTTTCATCAACGAGTTGAGCAGCCTCAGATTGTCAGTGAATATGATATGGCTTTGGATTTGGATTTGAATTTGAATTCGAATTCCACGGTTATTGAGGAAAACGAGGATCAGGGTTTGACTGATTTGAAATTAGGTTTAGGGTTAGGGTTCGGAAGGGAGAGGCATCATGTGAACCTTAATGATAGTTCTGGACTTCGAGAGATGGATGAAGACTGGGAAAGTGAAGATGAAGATGAAGATGAAGATGAAGGCGGTGAGACTTTTTTCAATATCGGGCTTCCTGCGTTCGAGTCCTTAGAGGTAAGGGACGAACGTCTAGATGATTTTTCAGATGAGGAGACCAATGAGATGATTTTTGGATTGTTATTGCATTCTGAAAGTGAAAGTACGCATGGGGGTCATTTTCATGAGGACGATGAAGATGATGGAGCTTGCCCCCTTTGCTGGGATTCCCTCAGACTCGAGGATCAGAGGGAGACAAATGAAGGTTTAGAGTGGGAGGAAGTGGGTCCATGGGTCGAAGAGCTAGAAGCTCCCAGCACAAGTGTTGATGCTGATGATGGTTTAGGTATTTCAAATACTCCAATTAATCTATCTGACATTGTGGATGATTCGATTATCAATCGGAATATGGGATGGCAAGTTTTGTTTGATGGAAGTTATTTGGACAGAAACTTGGAGTTGGAGTATGGAGTTGTAATGCATAGCGAAAGTGATAATTTTGTGGAGACTGTAGAATATGAGGTAATGATTGGTCAAATGGGGCAACATAATGAAATTAATCCTACTGGTAGTTCAGCAGCCTCGAAAGCAGTTGTTCAAAATCTTCCAACGGTGGTTATGACTCAAGAGGAGGTTGATAAAAATGATACCCTTTGTGCTATTTGTAAGGATGGTATTAATGTTGGTGAAAATGGAAAGATATTGCCCTGCACTCATGTCTTCCATGAGGAGTGCATTTTTCCATGGTTGGATATCCGAAACACCTGCCCTGTTTGTCGGTATGAACTCCCCACAGACGATGCTGATTACGAGCAACAAAGGAGGCACCACAGACAGTGA 1119 42.81 MEIVDLLDRGNQASYVMDLFHQRVEQPQIVSEYDMALDLDLNLNSNSTVIEENEDQGLTDLKLGLGLGFGRERHHVNLNDSSGLREMDEDWESEDEDEDEDEGGETFFNIGLPAFESLEVRDERLDDFSDEETNEMIFGLLLHSESESTHGGHFHEDDEDDGACPLCWDSLRLEDQRETNEGLEWEEVGPWVEELEAPSTSVDADDGLGISNTPINLSDIVDDSIINRNMGWQVLFDGSYLDRNLELEYGVVMHSESDNFVETVEYEVMIGQMGQHNEINPTGSSAASKAVVQNLPTVVMTQEEVDKNDTLCAICKDGINVGENGKILPCTHVFHEECIFPWLDIRNTCPVCRYELPTDDADYEQQRRHHRQ 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41464965 41466083 - Bma008296.1 Bma12g00953 92379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00953 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 369 - -
Bma12g00953 372 SMART ring_2 312 352 IPR001841 -
Bma12g00953 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 359 IPR013083 -
Bma12g00953 372 MobiDBLite consensus disorder prediction 80 104 - -
Bma12g00953 372 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Bma12g00953 372 Pfam Ring finger domain 312 353 IPR001841 -
Bma12g00953 372 MobiDBLite consensus disorder prediction 87 104 - -
Bma12g00953 372 SUPERFAMILY RING/U-box 292 359 - -
Bma12g00953 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1 76 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00953 - - - cpap:110823438 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00085 Bma-Chr6:1352946 Bma12g00953 Bma-Chr12:41464965 8.15E-11 dispersed
Bma12g00953 Bma-Chr12:41464965 Bma14g01068 Bma-Chr14:12991749 7.20E-36 dispersed
Bma12g00953 Bma-Chr12:41464965 Bma11g00109 Bma-Chr11:1075332 4.07E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g412 . . Bda06g00505 . . . . Bma12g00953 . . . Cma11g00234 . Car11g00211 Sed08g0309 . Cpe04g01438 Bhi02g00049 Tan09g1996 Cmetu02g0986 . Hepe09g0298 . . Cla06g01517 Cam06g1673 Cec06g1734 Cco06g1730 Clacu06g1639 Cmu06g1587 Cre06g2398 Cone11ag0342 . . . . . . . . Blo15g00350 . . Bpe07g00744 . . . . . Cmo11g00237 . . . . . . . . . . . . . . . . . . . . Lsi06g01383 Csa01g00325 Chy02g02416 Cme02g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017266 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00953 Bma_Chr12 FPKM 8.576738 9.792189 9.584277 11.095386 19.205738 14.458673 15.951765 23.858494 24.777298 24.329638