Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00957 TCCACTCAATATTCTCTTGCAGAGGCCTATGATTCGCTTGATCCAACGGGAAATATCACTATCAAATGGGATATAATGAGCTGGGCTCCAGATGGTTATGTTGCTGTCGTCACGATGTACAATTTCCAGCAATATCGTCATATTCAAGCCCCGGGTTGGAGTTTAGGGTGGACATGGGCAAAGAAGGAAGTAATCTGGAGCATGGTGGGAGCCCAAACAACAGAGCAAGGAGATTGCTCCAAATTCAAAGGCAATGTTCCCCATTGCTGTAAAAAGGATCCAACAGTTGTGGATTTACTTCCCGGAACACCTTACAACCAGCAGATTGCGAATTGTTGCAAAGGCGGTGTCATAAACTCGTGGGTGCAGGACCCGGCCAATGCAGCCAGCTCGTTCCAGGTCAGCGTTGGTTCGGCCGGAACGACTAACAAAACGGTTAGAGTGCCGAAAAACTTTACACTCAAAGCTCCTGGCCCCGGCTATACTTGTGGGCCTGCAAAGGTCGGGAAACAGACTAAATTTATCTCCGCTGATACGAGAAGAACGACACAAGCTCTGATGACGTGGAACGTTACTTGCACGTATTCGCAATTTCTCGCTCAAAAGACGCCAACCTGTTGTGTTTCTCTCTCGTCCTTCTACAACGACACAATCGTAAACTGCCCAACCTGCACTTGCGGCTGTCAGAACAACATAACAGATCCTGGGAGTTGTGTCGACCCGGATTCTCCATACTTAGCCTCGGTCGTATCGAGTCGTAAATCGAGTAATACTCTCGTTCAGTGTACGAGTCATATGTGTCCGATTAGAGTCCATTGGCACGTGAAGCTCAATTACAAGGAGTATTGGAGGGTGAAGATTACAATCACGAATTTCAACTACCGAATGAATTACACGTTGTGGAATCTCGTCGTTCAACACCCGAATTTTGATAATCTTACTCAGTTGTTCAGCTTTAATTACAAGTCGCTAACTCCCTATGAAGGCTTAAACGATACTGCTATGCTATGGGGCGTCAAGTTTTACAACGATTTGTTGATGGAGGCAGGCCCTCTCGGAAACGTACAATCCGAACTACTGTTCCGAAAAGACAAAAATACGTTTACTTTCGATAAGGGTTGGGCTTTTCCGAGAAGAATTTATTTCAACGGCGATAACTGCGTGATGCCACCTCCAGACGCCTATCCATGGCTGCCTAATACGAGTACCCGGCAAGCCATTTCGATAGTTCATTATTTCATTATTATGGCTGCTTTGGCATTCCTATCGGCCTATGCA 1278 46.24 STQYSLAEAYDSLDPTGNITIKWDIMSWAPDGYVAVVTMYNFQQYRHIQAPGWSLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWVQDPANAASSFQVSVGSAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKQTKFISADTRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNITDPGSCVDPDSPYLASVVSSRKSSNTLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYTLWNLVVQHPNFDNLTQLFSFNYKSLTPYEGLNDTAMLWGVKFYNDLLMEAGPLGNVQSELLFRKDKNTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNTSTRQAISIVHYFIIMAALAFLSAYA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41509154 41511404 + Bma030525 Bma12g00957 92383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00957 426 PIRSF COBRA 1 426 IPR006918 GO:0010215|GO:0031225
Bma12g00957 426 PANTHER COBRA-LIKE PROTEIN 2 423 - -
Bma12g00957 426 Pfam COBRA-like protein 33 196 IPR006918 GO:0010215|GO:0031225
Bma12g00957 426 PANTHER PROTEIN COBRA 2 423 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00957 - - - jre:109004756 808.905
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00250 Bma12g00957 CCT
Bma08g00250 Bma12g00957 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00250 Bma-Chr8:3113739 Bma12g00957 Bma-Chr12:41509154 0 dispersed
Bma12g00957 Bma-Chr12:41509154 Bma13g00189 Bma-Chr13:2230022 0 dispersed
Bma12g00957 Bma-Chr12:41509154 Bma14g01050 Bma-Chr14:12514934 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g91 . . Bda06g00512 . . . . Bma12g00957 . . . . . . . . . Bhi05g01752 . . . . . . . . . . . . . Cone12ag1205 Cone8ag1257 . Cone10ag1185 . . . Cme01g01287 . . Bda15g01047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g445 . . Bda06g00512 Bda15g00631 . . . Bma12g00957 . . Cma10g00288 Cma11g00220 Car10g00270 Car11g00198 Sed08g0289 Cpe20g00086 Cpe04g01448 Bhi02g00080 Tan09g2022 Cmetu02g1379 . Hepe09g0286 . . Cla06g01530 Cam06g1687 Cec06g1749 Cco06g1747 Clacu06g1654 Cmu06g1601 Cre06g2413 . . . . Lsi02g00135 Csa01g00618 . . . . . . Bpe07g00746 . . Bma08g00250 . Cmo10g00306 Cmo11g00223 . . . . . Cpe18g00714 . . . . . . . . . . . . . . Lsi06g01401 Csa01g00340 Chy02g02402 Cme02g01812
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00957 CCT,ECH 21 410 COBRA Gene Family AT5G60920 82.0 3.6e-209 724.2
Bma14g01050 . 14 407 COBRA Gene Family AT5G60920 76.6 5.4e-197 683.7
Bma13g00189 . 47 441 COBRA Gene Family AT5G60920 74.1 1.3e-195 679.1
Bma08g00250 CCT,ECH 60 458 COBRA Gene Family AT5G60920 67.2 5.2e-176 614.0
Bma05g00929 . 40 413 COBRA Gene Family AT5G60920 51.0 6.3e-121 431.0
Bma14g01053 . 1 219 COBRA Gene Family AT5G60920 72.6 4.4e-98 355.1
Bma14g01054 . 37 248 COBRA Gene Family AT5G60920 72.5 1.1e-93 340.5
Bma13g00189 . 21 441 COBRA Gene Family AT3G02210 74.6 1.7e-204 708.8
Bma12g00957 CCT,ECH 7 422 COBRA Gene Family AT3G02210 74.0 4.4e-200 694.1
Bma14g01050 . 1 393 COBRA Gene Family AT3G02210 76.5 2.3e-196 681.8
Bma08g00250 CCT,ECH 46 443 COBRA Gene Family AT3G02210 68.2 8.3e-175 610.1
Bma14g01053 . 1 205 COBRA Gene Family AT3G02210 72.1 8.0e-93 337.8
Bma14g01054 . 37 248 COBRA Gene Family AT3G02210 71.3 2.3e-92 336.3
Bma14g01050 . 1 409 COBRA Gene Family AT3G29810 75.2 2.3e-198 688.3
Bma13g00189 . 29 444 COBRA Gene Family AT3G29810 73.1 2.2e-196 681.8
Bma12g00957 CCT,ECH 4 408 COBRA Gene Family AT3G29810 75.2 5.4e-195 677.2
Bma08g00250 CCT,ECH 43 456 COBRA Gene Family AT3G29810 65.3 4.9e-172 600.9
Bma05g00929 . 12 421 COBRA Gene Family AT3G29810 53.6 5.0e-132 468.0
Bma14g01053 . 1 228 COBRA Gene Family AT3G29810 70.1 1.4e-94 343.6
Bma14g01054 . 19 253 COBRA Gene Family AT3G29810 66.0 1.5e-91 333.6
Bma08g00250 CCT,ECH 45 367 COBRA Gene Family AT5G15630 84.6 3.7e-175 610.9
Bma12g00957 CCT,ECH 7 331 COBRA Gene Family AT5G15630 72.2 2.5e-147 518.5
Bma14g01050 . 2 325 COBRA Gene Family AT5G15630 68.3 1.4e-142 502.7
Bma13g00189 . 30 358 COBRA Gene Family AT5G15630 66.4 5.9e-141 497.3
Bma14g01054 . 24 180 COBRA Gene Family AT5G15630 52.5 4.2e-46 182.2
Bma14g01053 . 1 137 COBRA Gene Family AT5G15630 54.3 4.0e-44 175.6
Bma14g01050 . 4 190 COBRA Gene Family AT5G60950 57.4 4.3e-62 234.6
Bma12g00957 CCT,ECH 17 197 COBRA Gene Family AT5G60950 58.6 3.6e-61 231.5
Bma13g00189 . 24 223 COBRA Gene Family AT5G60950 54.0 1.1e-60 229.9
Bma08g00250 CCT,ECH 56 236 COBRA Gene Family AT5G60950 58.0 2.2e-58 222.2
Bma05g00929 . 13 415 COBRA Gene Family AT1G09790 57.8 5.0e-148 521.2
Bma13g00189 . 16 429 COBRA Gene Family AT1G09790 51.8 1.0e-132 470.3
Bma08g00250 CCT,ECH 24 438 COBRA Gene Family AT1G09790 53.2 1.7e-132 469.5
Bma12g00957 CCT,ECH 5 402 COBRA Gene Family AT1G09790 53.8 6.5e-132 467.6
Bma14g01050 . 1 395 COBRA Gene Family AT1G09790 54.1 1.9e-131 466.1
Bma14g01053 . 1 207 COBRA Gene Family AT1G09790 57.3 3.2e-70 262.7
Bma14g01054 . 38 250 COBRA Gene Family AT1G09790 54.4 1.1e-67 254.2
Bma04g01143 BCT 1 576 COBRA Gene Family AT4G16120 63.3 2.2e-232 802.0
Bma05g01021 BCT 1 491 COBRA Gene Family AT4G16120 67.1 4.3e-212 734.6
Bma13g01035 CCT 38 636 COBRA Gene Family AT4G16120 55.6 1.6e-211 732.6
Bma04g01143 BCT 1 571 COBRA Gene Family AT3G16860 62.0 1.2e-219 759.6
Bma13g01035 CCT 35 636 COBRA Gene Family AT3G16860 53.1 2.2e-200 695.7
Bma05g01021 BCT 1 502 COBRA Gene Family AT3G16860 63.5 3.8e-197 684.9
Bma04g01143 BCT 1 557 COBRA Gene Family AT5G49270 59.5 1.6e-211 732.6
Bma13g01035 CCT 34 634 COBRA Gene Family AT5G49270 53.1 2.0e-201 699.1
Bma05g01021 BCT 1 510 COBRA Gene Family AT5G49270 59.2 2.7e-190 662.1
Bma13g01035 CCT 6 634 COBRA Gene Family AT3G20580 64.3 1.9e-255 878.6
Bma04g01143 BCT 3 558 COBRA Gene Family AT3G20580 54.1 3.6e-190 661.8
Bma05g01021 BCT 1 491 COBRA Gene Family AT3G20580 56.8 7.8e-177 617.5
Bma13g01035 CCT 10 657 COBRA Gene Family AT4G27110 60.2 1.0e-237 819.7
Bma04g01143 BCT 1 558 COBRA Gene Family AT4G27110 50.7 4.5e-177 618.2
Bma05g01021 BCT 5 506 COBRA Gene Family AT4G27110 51.8 8.3e-163 570.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00957 Bma_Chr12 FPKM 2.26087 2.648349 3.683753 5.260932 12.120832 9.206212 10.649434 1.90998 2.825233 3.356371