Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00964 ATGGCGAAGACTGTGACACCAGGTGGGATTTTGAAGATTCAGGCTGATCCAACGCCGGAATCGTCCTCGGAAGTCTCGGATTTAGTGCTTCAGGTCCTCGATCTTAAAGCCACGGGGAATCGTTACATGTTTACTGCCAGCGATGGAACTATGAAGTTGAAAGCTATTCTACCGTCGAATCTCACTTCCGAGGTGATCTCAGGGAAGATTCAGAATCTAGGTCTTATTCGCATTCTTGATTATTCCCTCAATGATATCCCAAACAAGTCGGAGAAGTATATGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATTAAGAACGTACTCAAAAGTGAGGAACCTGGATTGTTTCTGACACCAAAACGAGAAAATGACTGTGAGAGTGAAGTGAAAGGAGAAAAACCAGGGATTCTTCTAACGCCAAAGCCTGAAATGTTTGCAAAATCAGCAGCTCAAATTGTAAACGAACAAAGATCAAACTTGGCCCCAACTGCACGAATGGCCATGACAAGGAGAGTTCATCCTCTTCTTTCATTGAATCCCTACCAAGGCAATTGGACAATTAAAGTTCGTGTTACGAATAAGGAAGTTATGCGTTATTACAAGAATGCCAGGGGAGAAGGATGTGTCTTCAACGTCGAATTGACTGATGATGATGAAACCCAAATACAGGCAACAATGTTCAATGAAGCTGCTAAAAAGTTTTATGATAAATTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTAAAGGTTGCTAACAAGAAATTCAGTACAGTGAAAAATGATTATGAAATGACTTTGAATGAGAATTCAGAGGTGGAAGAGGCGATCAACGAAGCTACTTTTGTGCCTGTGACGAAATTCAATTTTGTCCCAATTGATATGTTGGGTCCTTACGTGAATGGAAAAGAACTTGTTGATGTTATTGGAGTGGTTCAGAATGTTTCCCCTACAATCAGTATTCGAAGGAAGATCAATAATGAAACTACTCCGAAGCGTGATATAACTATTGCTGATGAGACGAAAAAAACAGTTGTAGTCTCACTATGGAATGAGCTCGCAACTAATGTGGGGCAGGAGTTACTCGACATGGTGGATCAATCACCCGTGATTGCAATTAAGTCTCTTAAAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGTAAAAGCAAATTGCTAGTAAATCCAGACATACCTGAGGCAAAAAAGTTAAAATTATGGTTTGATTCTGAAGGCAAAGGAACATCAATGGCGTCTGTTGGCTCTAGTTTGAGCCCATCATCCAAGAATGGAGAAAGGTCTATGTATTCTGACCGGACATCTTTGTCTTACATAATCCAAAACCCATCATTAGGAGATGATAAGCCGATGTTCTTCAGCATTAGAGCATATATTAACTCCATCAAACCTGATCAGACCATGTGGTACCGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGATGCTATAGGTTCTGGATTTTGGTGTGAAGGTTGCCAGAAAAGTGATGGAGAATGCAGTTTAAGATACATAATGGTAGTTAGAATTTCTGATGCCAGCGGCGAAGTCTATCTCTCTCTCTTCAATGAGGAGGCAGAAAAAATCATTGGATGCACAGCTGATGAGCTTGACAAAATGAAATCACAAATTGCTGAAGAGAATTCATATGAGATGAAATTGAAAGAGGCTACTTGGGTTCCTTATCTATTTAGAGTAAGCGTTTCTCAGAATGAATACAACAATGAGAAGAGACAGAGGATTACTGCCAGAGCTGTTGCTCCTGTCGATTTTGCTTCTGAATCCAGACTTTTGCTTGAAGAAATTTCAAGTTCAAGAAATTCAAAATGA 1878 40.04 MAKTVTPGGILKIQADPTPESSSEVSDLVLQVLDLKATGNRYMFTASDGTMKLKAILPSNLTSEVISGKIQNLGLIRILDYSLNDIPNKSEKYMIVTKCEVVSPALEMEIKNVLKSEEPGLFLTPKRENDCESEVKGEKPGILLTPKPEMFAKSAAQIVNEQRSNLAPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEVMRYYKNARGEGCVFNVELTDDDETQIQATMFNEAAKKFYDKFELGKVYYISKGTLKVANKKFSTVKNDYEMTLNENSEVEEAINEATFVPVTKFNFVPIDMLGPYVNGKELVDVIGVVQNVSPTISIRRKINNETTPKRDITIADETKKTVVVSLWNELATNVGQELLDMVDQSPVIAIKSLKVGDFQGVSLSSVSKSKLLVNPDIPEAKKLKLWFDSEGKGTSMASVGSSLSPSSKNGERSMYSDRTSLSYIIQNPSLGDDKPMFFSIRAYINSIKPDQTMWYRACKTCNKKVTDAIGSGFWCEGCQKSDGECSLRYIMVVRISDASGEVYLSLFNEEAEKIIGCTADELDKMKSQIAEENSYEMKLKEATWVPYLFRVSVSQNEYNNEKRQRITARAVAPVDFASESRLLLEEISSSRNSK 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41612761 41616633 - Bma008306.1 Bma12g00964 92390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00964 625 Gene3D - 4 113 IPR012340 -
Bma12g00964 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Bma12g00964 625 CDD RPA1_DBD_A 180 283 - -
Bma12g00964 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
Bma12g00964 625 MobiDBLite consensus disorder prediction 425 445 - -
Bma12g00964 625 CDD RPA1_DBD_C 463 620 IPR013955 -
Bma12g00964 625 PANTHER REPLICATION FACTOR A 1, RFA1 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma12g00964 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bma12g00964 625 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 619 - -
Bma12g00964 625 CDD RPA1_DBD_B 313 419 - -
Bma12g00964 625 SUPERFAMILY Nucleic acid-binding proteins 178 288 IPR012340 -
Bma12g00964 625 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bma12g00964 625 MobiDBLite consensus disorder prediction 423 445 - -
Bma12g00964 625 Gene3D - 291 431 IPR012340 -
Bma12g00964 625 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma12g00964 625 Gene3D - 177 286 IPR012340 -
Bma12g00964 625 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bma12g00964 625 MobiDBLite consensus disorder prediction 1 21 - -
Bma12g00964 625 Gene3D - 432 620 IPR012340 -
Bma12g00964 625 SUPERFAMILY Nucleic acid-binding proteins 447 620 IPR012340 -
Bma12g00964 625 Pfam Replication protein A OB domain 309 405 IPR031657 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00242 Bma12g00964 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00893 Bma-Chr6:43815724 Bma12g00964 Bma-Chr12:41612761 3.56E-84 dispersed
Bma12g00253 Bma-Chr12:3252412 Bma12g00964 Bma-Chr12:41612761 5.28E-88 dispersed
Bma12g00964 Bma-Chr12:41612761 Bma08g00242 Bma-Chr8:2989413 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00964 K07466 - mnt:21390529 953.74