Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00966 ATGGAAGGATTGCGGAGTCCATCAATTCCTACAAAATGTGGGCAAATATGCATGTCTCTGCGGCCTCCATTGCCTCTTAAAGTTGCAAGAAACTTTTATAGAAGTCAAGTTGTGATGACTGCACATCCCAAATCTTTCAATAAAATCGTTGCTTCAGTTCAACCATTAGAGAGATCAACAACGGATAACTTTGAGAACACGCTACCATCTAAAGAGGTGCTTGGTCTTTGGAAAAATGCAAATGCCGTGTGCTTTGATGTTGATAGCACGGTTTGCTTAGACGAGGGTATTGATGAACTAGCCGATTTTTGTGGAGCTGGGAAGGCTGTAGCAGAATGGACTGCTAGGGCGATGGGTGGTTCTGTACCATTTGAGGAAGCCTTAGCTGCTAGACTATCTTTATTCAAGCCAACCCTTTCTCAAGTTGATGATTTTCTTGTTAAGAGACCACCAAGGCTTTCTCCCGGCATACACGATTTAGTGAAGAAACTCAAAGCTAACAAAACAGACGTTTATCTCGTTTCTGGAGGCTTTCGCCACATGATTAACCCTGTCGCATCAATCCTCTGTATTCCAGAAAAAAACATTTTTGCAAATCAACTGCTGTTCGGAAGCACAGGAGAATTTTTTGGATTTGACAAAAATGAGCCTACTTCAAGGAGTGGAGGTAAAGCCACTGCAGTTCTTAATCTGAGGAAGGCTCATGGATACAAGACATTGGTCATGATTGGTGATGGTGCAACTGATCTTGAGGCTCGGAAACCAGGAGGTGCCGACTTGTTCATATGTTATGCTGGTGTTGCTCACCGAGAGGCTGTTGCAGCCAAGGCAGATTGGGTAGTTTTCAATTTTAGAGATCTCATAGATTCATGTTAG 876 43.04 MEGLRSPSIPTKCGQICMSLRPPLPLKVARNFYRSQVVMTAHPKSFNKIVASVQPLERSTTDNFENTLPSKEVLGLWKNANAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPTLSQVDDFLVKRPPRLSPGIHDLVKKLKANKTDVYLVSGGFRHMINPVASILCIPEKNIFANQLLFGSTGEFFGFDKNEPTSRSGGKATAVLNLRKAHGYKTLVMIGDGATDLEARKPGGADLFICYAGVAHREAVAAKADWVVFNFRDLIDSC 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41635818 41638119 - Bma008308.1 Bma12g00966 92392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00966 291 CDD HAD_PSP_eu 82 284 - -
Bma12g00966 291 SUPERFAMILY HAD-like 74 288 IPR036412 -
Bma12g00966 291 Pfam haloacid dehalogenase-like hydrolase 81 255 - -
Bma12g00966 291 PANTHER PHOSPHOSERINE PHOSPHATASE 34 290 - -
Bma12g00966 291 Gene3D - 69 290 IPR023214 -
Bma12g00966 291 Gene3D Phosphoserine phosphatase; domain 2 96 148 - -
Bma12g00966 291 PANTHER BNAA06G12800D PROTEIN 34 290 - -
Bma12g00966 291 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 82 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00966 K01079 serB, PSPH; phosphoserine phosphatase [EC:3.1.3.3] - vvi:100251806 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00917 Bma-Chr9:48530779 Bma12g00966 Bma-Chr12:41635818 1.70E-97 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g655 . . Bda06g00523 . . . . Bma12g00966 . . . . . Car11g00184 . . Cpe04g01462 Bhi02g00097 . . . Hepe09g0271 . . Cla06g01541 Cam06g1700 Cec06g1762 Cco06g1761 Clacu06g1667 Cmu06g1613 Cre06g2426 . . Cone13ag0037 Cone19ag0046 . . . . . Blo15g00335 . . Bpe07g00757 . . . . . Cmo11g00208 . . . . . . . . . . . . . . . . . . . . Lsi06g01414 Csa01g00292 Chy02g02443 Cme02g01831
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006561 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 7 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00966 Bma_Chr12 FPKM 4.678257 5.283955 18.569963 18.355921 8.011588 8.759512 8.111214 19.728371 18.073656 18.699631